Evidence map›Paper›PMID 38811473›Full record

ArticleCell biochemistry and biophysics2024

Structural, Functional and Molecular Dynamics Examination of a de novo cloned Otopetrin-like Proton Channel in crayfish.

Mustafa Erdem Sağsöz, Berk Sağlam, Kaan Arslan, Turgut Baştuğ, Murat Çavuş, Nuhan Puralı

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Article in Cell biochemistry and biophysics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Mustafa Erdem SağsözBiophysics Department, Hacettepe University, Faculty of Medicine, Ankara, Türkiye.ORCID http://orcid.org/0000-0002-3324-6942
Berk SağlamBiophysics Department, Hacettepe University, Faculty of Medicine, Ankara, Türkiye.ORCID http://orcid.org/0000-0002-1438-8806
Kaan ArslanBiophysics Department, Hacettepe University, Faculty of Medicine, Ankara, Türkiye.ORCID http://orcid.org/0000-0002-5122-2880
Turgut BaştuğBiophysics Department, Hacettepe University, Faculty of Medicine, Ankara, Türkiye.ORCID http://orcid.org/0000-0001-9123-9292
Murat ÇavuşBozok University, Faculty of Education, Mathematics and Science Education, Yozgat, Türkiye.ORCID http://orcid.org/0000-0002-2341-6485
Nuhan PuralıBiophysics Department, Hacettepe University, Faculty of Medicine, Ankara, Türkiye. npurali@hacettepe.edu.tr.ORCID http://orcid.org/0000-0002-0604-2303

Funding

Atatürk Üniversitesi TSA-2023-11276Hacettepe Üniversitesi 15403Türkiye Bilimsel ve Teknolojik Araştırma Kurumu 218S553
6 · The paper itself

Abstract

Proton channels play a crucial role in many biological functions, as they are responsible for the selective transport of protons across cell membranes. Recently, Otopetrins, a family of eukaryotic proton-selective ion channels, have attracted significant attention due to their diverse physiological roles. Despite the importance of Otopetrins, their structural and functional properties remain relatively unexplored. As a model organism, crayfish have been extensively studied to gain insights into the functioning of the nervous system. These studies cover a wide range of aspects, including the properties of individual neurons and behavioral science. However, studying the physiological systems of crayfish poses challenges for molecular research due to limited molecular sequence information available for these organisms. In the present work was identified an originally cloned mRNA, coding an Otopetrin like proton channel in the crayfish. The coded protein was modeled in silico and possible conduction mechanisms and pathways were revealed. A plasmid of the cloned mRNA was heterologously expressed in HEK293T cells. Functional experiments on transfected cells indicated that the expressed mRNA was coupled to proton conduction across the cell membrane.

Indexed as

Amino Acid SequenceAstacoideaCloning, MolecularMolecular Dynamics SimulationAnimalsHEK293 CellsHumansIon ChannelsProtonsRNA, MessengerIon ChannelsProtonsRNA, MessengerCrayfishMolecular dynamicsOtopetrinProton channelRatio-metric fluorescence microscopy

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.