Evidence map›Paper›PMID 38811438›Full record

ArticleEuropean spine journal : official publication of the European Spine Society, the European Spinal Deformity Society, and the European Section of the Cervical Spine Research Society2024

Early evaluation of a natural language processing tool to improve access to educational resources for surgical patients.

James Booker, Jack Penn, Kawsar Noor, Richard J B Dobson, Jonathan P Funnell, Chan Hee Koh, Danyal Z Khan, Nicola Newall, David Rowland, Siddharth Sinha and 3 more

Abstract read
In one paragraph

Article in European spine journal : official publication of the European Spine Society, the European Spinal Deformity Society, and the European Section of the Cervical Spine Research Society, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

James BookerWellcome/EPSRC Centre for Interventional and Surgical Sciences, University College London, London, UK. James.booker.19@ucl.ac.uk.ORCID 0000-0001-7588-2827
Jack PennWellcome/EPSRC Centre for Interventional and Surgical Sciences, University College London, London, UK.
Kawsar NoorInstitute for Health Informatics, University College London, London, UK.
Richard J B DobsonInstitute for Health Informatics, University College London, London, UK.
Jonathan P FunnellWellcome/EPSRC Centre for Interventional and Surgical Sciences, University College London, London, UK.
Chan Hee KohWellcome/EPSRC Centre for Interventional and Surgical Sciences, University College London, London, UK.
Danyal Z KhanWellcome/EPSRC Centre for Interventional and Surgical Sciences, University College London, London, UK.
Nicola NewallWellcome/EPSRC Centre for Interventional and Surgical Sciences, University College London, London, UK.
David RowlandVictor Horsely Department of Neurosurgery, National Hospital for Neurology and Neurosurgery, London, UK.
Siddharth SinhaWellcome/EPSRC Centre for Interventional and Surgical Sciences, University College London, London, UK.
Simon C WilliamsWellcome/EPSRC Centre for Interventional and Surgical Sciences, University College London, London, UK.
Parag SayalVictor Horsely Department of Neurosurgery, National Hospital for Neurology and Neurosurgery, London, UK.
Hani J MarcusWellcome/EPSRC Centre for Interventional and Surgical Sciences, University College London, London, UK.

Funding

EPSRC NS/A000050/1Wellcome TrustWellcome Trust 203145Z/16/Z
6 · The paper itself

Abstract

purposeAccessible patient information sources are vital in educating patients about the benefits and risks of spinal surgery, which is crucial for obtaining informed consent. We aim to assess the effectiveness of a natural language processing (NLP) pipeline in recognizing surgical procedures from clinic letters and linking this with educational resources.

methodsRetrospective examination of letters from patients seeking surgery for degenerative spinal disease at a single neurosurgical center. We utilized MedCAT, a named entity recognition and linking NLP, integrated into the electronic health record (EHR), which extracts concepts and links them to systematized nomenclature of medicine-clinical terms (SNOMED-CT). Investigators reviewed clinic letters, identifying words or phrases that described or identified operations and recording the SNOMED-CT terms as ground truth. This was compared to SNOMED-CT terms identified by the model, untrained on our dataset. A pipeline linking clinic letters to patient-specific educational resources was established, and precision, recall, and F1 scores were calculated.

resultsAcross 199 letters the model identified 582 surgical procedures, and the overall pipeline after adding rules a total of 784 procedures (precision = 0.94, recall = 0.86, F1 = 0.91). Across 187 letters with identified SNOMED-CT terms the integrated pipeline linking education resources directly to the EHR was successful in 157 (78%) patients (precision = 0.99, recall = 0.87, F1 = 0.92).

conclusionsNLP accurately identifies surgical procedures in pre-operative clinic letters within an untrained subspecialty. Performance varies among letter authors and depends on the language used by clinicians. The identified procedures can be linked to patient education resources, potentially improving patients' understanding of surgical procedures.

Indexed as

Natural Language ProcessingPatient Education as TopicElectronic Health RecordsHumansRetrospective StudiesSystematized Nomenclature of MedicineAutomationEducationMachine learningNatural language processingSpine

Identifiers

PMID38811438
PMCPMC11269391

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.