Evidence map›Paper›PMID 38810648›Full record

ArticleStructure (London, England : 1993)2024

Structural basis for the broad antigenicity of the computationally optimized influenza hemagglutinin X6.

Kaito A Nagashima, John V Dzimianski, Meng Yang, Jan Abendroth, Giuseppe A Sautto, Ted M Ross, Rebecca M DuBois, Thomas E Edwards, Jarrod J Mousa

Abstract read
In one paragraph

Article in Structure (London, England : 1993), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Kaito A NagashimaCenter for Vaccines and Immunology, College of Veterinary Medicine, University of Georgia, Athens, GA, USA; Department of Infectious Diseases, College of Veterinary Medicine, University of Georgia, Athens, GA, USA.
John V DzimianskiDepartment of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA, USA.
Meng YangUCB BioSciences, Bainbridge Island, WA, USA; Seattle Structural Genomics Center for Infectious Diseases (SSGCID), Seattle, WA, USA.
Jan AbendrothUCB BioSciences, Bainbridge Island, WA, USA; Seattle Structural Genomics Center for Infectious Diseases (SSGCID), Seattle, WA, USA.
Giuseppe A SauttoFlorida Research and Innovation Center, Cleveland Clinic, Port Saint Lucie, FL, USA.
Ted M RossCenter for Vaccines and Immunology, College of Veterinary Medicine, University of Georgia, Athens, GA, USA; Department of Infectious Diseases, College of Veterinary Medicine, University of Georgia, Athens, GA, USA; Florida Research and Innovation Center, Cleveland Clinic, Port Saint Lucie, FL, USA.
Rebecca M DuBoisDepartment of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA, USA.
Thomas E EdwardsUCB BioSciences, Bainbridge Island, WA, USA; Seattle Structural Genomics Center for Infectious Diseases (SSGCID), Seattle, WA, USA.
Jarrod J MousaCenter for Vaccines and Immunology, College of Veterinary Medicine, University of Georgia, Athens, GA, USA; Department of Infectious Diseases, College of Veterinary Medicine, University of Georgia, Athens, GA, USA; Department of Biomedical Sciences, College of Medicine, Florida State University, Tallahassee, FL, USA. Electronic address: jarrod.mousa@med.fsu.edu.

Funding

COVID Supplement - COMPONENT A OF THE COLLABORATIVE INFLUENZA VACCINE INNOVATION CENTERS (CIVICS) PROGRAM TO DESIGN AND EVALUATE INNOVATIVE INFLUENZA VACCINE APPROACHES,75N93019C00052 · NIAID · UNIVERSITY OF GEORGIA · PI ROSS, TED · 2019 to 2025
$74.6M
User Training & OutreachP30GM138396 · NIGMS · UCHICAGO ARGONNE, LLC · PI ROBERT F. FISCHETTI · 2020 to 2026
$34.3M
NIAID NIH HHS 75N93019C00052NIAID NIH HHS HHSN272201700059CNIGMS NIH HHS P30 GM138396
6 · The paper itself

Abstract

Influenza causes significant morbidity and mortality. As an alternative approach to current seasonal vaccines, the computationally optimized broadly reactive antigen (COBRA) platform has been previously applied to hemagglutinin (HA). This approach integrates wild-type HA sequences into a single immunogen to expand the breadth of accessible antibody epitopes. Adding to previous studies of H1, H3, and H5 COBRA HAs, we define the structural features of another H1 subtype COBRA, X6, that incorporates HA sequences from before and after the 2009 H1N1 influenza pandemic. We determined structures of this antigen alone and in complex with COBRA-specific as well as broadly reactive and functional antibodies, analyzing its antigenicity. We found that X6 possesses features representing both historic and recent H1 HA strains, enabling binding to both head- and stem-reactive antibodies. Overall, these data confirm the integrity of broadly reactive antibody epitopes of X6 and contribute to design efforts for a next-generation vaccine.

Indexed as

Antibodies, ViralHemagglutinin Glycoproteins, Influenza VirusAntigens, ViralCrystallography, X-RayEpitopesHumansInfluenza A Virus, H1N1 SubtypeInfluenza, HumanInfluenza VaccinesModels, MolecularProtein BindingAntibodies, ViralAntigens, ViralEpitopesHemagglutinin Glycoproteins, Influenza VirusInfluenza VaccinesantibodyCOBRAepitopehemagglutinininfluenzavaccine

Identifiers

PMID38810648
PMCPMC11316637

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.