Evidence map›Paper›PMID 38810179›Full record

ArticleJCO precision oncology2024

Discovery and Validation of a 15-Gene Prognostic Signature for Clear Cell Renal Cell Carcinoma.

Rohit Mehra, Srinivas Nallandhighal, Brittney Cotta, Zayne Knuth, Fengyun Su, Amy Kasputis, Yuping Zhang, Rui Wang, Xuhong Cao, Aaron M Udager and 4 more

Abstract readValidation Study
In one paragraph

Article in JCO precision oncology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Rohit MehraUniversity of Michigan Rogel Cancer Center, Ann Arbor, MI.ORCID 0000-0002-6955-8884
Srinivas NallandhighalDepartment of Urology, Michigan Medicine, Ann Arbor, MI.
Brittney CottaDepartment of Urology, Michigan Medicine, Ann Arbor, MI.
Zayne KnuthDepartment of Urology, Michigan Medicine, Ann Arbor, MI.ORCID 0009-0006-1680-7353
Fengyun SuMichigan Center for Translational Pathology, Michigan Medicine, Ann Arbor, MI.
Amy KasputisDepartment of Urology, Michigan Medicine, Ann Arbor, MI.ORCID 0000-0001-7340-2383
Yuping ZhangMichigan Center for Translational Pathology, Michigan Medicine, Ann Arbor, MI.
Rui WangMichigan Center for Translational Pathology, Michigan Medicine, Ann Arbor, MI.ORCID 0000-0002-5356-9685
Xuhong CaoMichigan Center for Translational Pathology, Michigan Medicine, Ann Arbor, MI.ORCID 0000-0002-2455-3086
Aaron M UdagerUniversity of Michigan Rogel Cancer Center, Ann Arbor, MI.
Saravana M DhanasekaranMichigan Center for Translational Pathology, Michigan Medicine, Ann Arbor, MI.ORCID 0000-0002-0489-2224
Marcin P CieslikMichigan Center for Translational Pathology, Michigan Medicine, Ann Arbor, MI.ORCID 0000-0002-5467-1040
Todd M MorganUniversity of Michigan Rogel Cancer Center, Ann Arbor, MI.ORCID 0000-0002-1140-0603
Simpa S SalamiUniversity of Michigan Rogel Cancer Center, Ann Arbor, MI.ORCID 0000-0001-7461-7079

Funding

XenograftP30CA046592 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI THEODORE S LAWRENCE · 1988 to 2026
$178.2M
Defining the Biological Arc of Grade Group 1 Prostate CancerR37CA283857 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Simpa Samuel Salami · 2023 to 2026
$1.4M
NCI NIH HHS P30 CA046592NCI NIH HHS R37 CA283857
6 · The paper itself

Abstract

purposeDevelop and validate gene expression-based biomarker associated with recurrent disease to facilitate risk stratification of clear cell renal cell carcinoma (ccRCC). MATERIALS AND

methodsWe retrospectively identified 110 patients who underwent radical nephrectomy for ccRCC (

resultsAfter quality control, the discovery cohort comprised 50 patients with recurrence and 41 patients without, with a median follow-up of 26 and 36 months, respectively. We developed a 15-gene (15G) signature, which was independently associated with worse DFS and DSS (DFS: hazard ratio [HR], 11.08 [95% CI, 4.9 to 25.1]; DSS: HR, 9.67 [95% CI, 3.4 to 27.7]) in a multivariable model adjusting for clinicopathologic parameters (including stage, size, grade, and necrosis [SSIGN] score and Memorial Sloan Kettering Cancer Center nomogram) and mxCCP score. The 15G signature was also independently associated with worse DFS and DSS in both validation data sets (Validation A [n = 382], DFS: HR, 2.6 [95% CI, 1.6 to 4.3]; DSS: HR, 3 [95% CI, 1.4 to 6.1] and Validation B (n = 379), DFS: HR, 2.1 [95% CI, 1.2 to 3.6]; OS: HR, 3 [95% CI, 1.6 to 5.7]) adjusting for clinicopathologic variables and mxCCP score.

conclusionWe developed and validated a novel 15G prognostic signature to improve risk stratification of patients with ccRCC. Pending further validation, this signature has the potential to facilitate optimal treatment allocation.

Indexed as

Carcinoma, Renal CellKidney NeoplasmsAgedBiomarkers, TumorFemaleHumansMaleMiddle AgedNeoplasm Recurrence, LocalPrognosisRetrospective StudiesTranscriptomeBiomarkers, Tumor

Identifiers

PMID38810179
PMCPMC11569832

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.