Evidence map›Paper›PMID 38810104›Full record

ArticleBioinformatics (Oxford, England)2024

MultiRNAflow: integrated analysis of temporal RNA-seq data with multiple biological conditions.

Rodolphe Loubaton, Nicolas Champagnat, Pierre Vallois, Laurent Vallat

Abstract read
In one paragraph

Article in Bioinformatics (Oxford, England), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Rodolphe LoubatonUniversity of Lorraine, CNRS, Inria, IECL, F-54000 Nancy, France.ORCID 0000-0002-1442-7270
Nicolas ChampagnatUniversity of Lorraine, CNRS, Inria, IECL, F-54000 Nancy, France.ORCID 0000-0002-5128-2357
Pierre ValloisUniversity of Lorraine, CNRS, Inria, IECL, F-54000 Nancy, France.ORCID 0000-0002-2123-0142
Laurent VallatUniversity of Strasbourg, CNRS, UMR-7242 Biotechnology and Cell Signaling, F-67400 Illkirch, France.ORCID 0000-0002-5226-7706

Funding

ITMO Cancer AVIESAN
6 · The paper itself

Abstract

motivationThe dynamic transcriptional mechanisms that govern eukaryotic cell function can now be analyzed by RNA sequencing. However, the packages currently available for the analysis of raw sequencing data do not provide automatic analysis of complex experimental designs with multiple biological conditions and multiple analysis time-points.

resultsThe MultiRNAflow suite combines several packages in a unified framework allowing exploratory and supervised statistical analyses of temporal data for multiple biological conditions. AVAILABILITY AND IMPLEMENTATION: The R package MultiRNAflow is freely available on Bioconductor (https://bioconductor.org/packages/MultiRNAflow/), and the latest version of the source code is available on a GitHub repository (https://github.com/loubator/MultiRNAflow).

Indexed as

RNA-SeqSoftwareComputational BiologySequence Analysis, RNA

Identifiers

PMID38810104
PMCPMC11139518

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.