Evidence map›Paper›PMID 38809705›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

An encoding generative modeling approach to dimension reduction and covariate adjustment in causal inference with observational studies.

Qiao Liu, Zhongren Chen, Wing Hung Wong

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Qiao LiuDepartment of Statistics, Stanford University, Stanford, CA 94305.ORCID 0000-0002-9781-3360
Zhongren ChenDepartment of Statistics and Data Science, Yale University, New Haven, CT 06520.ORCID 0009-0007-0916-7033
Wing Hung WongDepartment of Statistics, Stanford University, Stanford, CA 94305.ORCID 0000-0001-7466-2339

Funding

Special EquipmentP50HG007735 · NHGRI · STANFORD UNIVERSITY · PI CHANG, HOWARD Y · 2014 to 2018
$15.2M
Center for Personal Dynamic RegulomesRM1HG007735 · NHGRI · STANFORD UNIVERSITY · PI CHANG, HOWARD Y · 2019 to 2023
$13.8M
Statistical methods for gene regulatory analysis and single cell genomicsR01HG010359 · NHGRI · STANFORD UNIVERSITY · PI WONG, WING H. · 2019 to 2022
$1.5M
HHS | National Institutes of Health (NIH) HG007735HHS | National Institutes of Health (NIH) HG010359National Science Foundation (NSF) DMS 1952386NHGRI NIH HHS P50 HG007735NHGRI NIH HHS R01 HG010359NHGRI NIH HHS RM1 HG007735
6 · The paper itself

Abstract

In this article, we develop CausalEGM, a deep learning framework for nonlinear dimension reduction and generative modeling of the dependency among covariate features affecting treatment and response. CausalEGM can be used for estimating causal effects in both binary and continuous treatment settings. By learning a bidirectional transformation between the high-dimensional covariate space and a low-dimensional latent space and then modeling the dependencies of different subsets of the latent variables on the treatment and response, CausalEGM can extract the latent covariate features that affect both treatment and response. By conditioning on these features, one can mitigate the confounding effect of the high dimensional covariate on the estimation of the causal relation between treatment and response. In a series of experiments, the proposed method is shown to achieve superior performance over existing methods in both binary and continuous treatment settings. The improvement is substantial when the sample size is large and the covariate is of high dimension. Finally, we established excess risk bounds and consistency results for our method, and discuss how our approach is related to and improves upon other dimension reduction approaches in causal inference.

Indexed as

average dose–response functionaverage treatment effectdeep generative modelsdimension reductionpotential outcome

Identifiers

PMID38809705
PMCPMC11161768

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.