Evidence map›Paper›PMID 38809589›Full record

ArticleMolecular biology of the cell2024

Optimization of the fluorogen-activating protein tag for quantitative protein trafficking and colocalization studies in

Katherine G Oppenheimer, Natalie A Hager, Ceara K McAtee, Elif Filiztekin, Chaowei Shang, Justina A Warnick, Marcel P Bruchez, Jeffrey L Brodsky, Derek C Prosser, Adam V Kwiatkowski and 1 more

Abstract read
In one paragraph

Article in Molecular biology of the cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Katherine G OppenheimerDepartment of Biological Sciences, University of Pittsburgh, PA 15260.
Natalie A HagerDepartment of Biological Sciences, University of Pittsburgh, PA 15260.
Ceara K McAteeDepartment of Biological Sciences, University of Pittsburgh, PA 15260.
Elif FiliztekinDepartment of Biological Sciences, University of Pittsburgh, PA 15260.
Chaowei ShangDepartment of Biological Sciences, University of Pittsburgh, PA 15260.
Justina A WarnickDepartment of Biological Sciences, University of Pittsburgh, PA 15260.
Marcel P BruchezMolecular Biosensor and Imaging Center, Carnegie Mellon University, Pittsburgh, PA 15213.
Jeffrey L BrodskyDepartment of Biological Sciences, University of Pittsburgh, PA 15260.ORCID 0000-0002-6984-8486
Derek C ProsserDepartment of Biology, Virginia Commonwealth University, Richmond, VA 23284.ORCID 0000-0002-6738-2758
Adam V KwiatkowskiDepartment of Cell Biology, School of Medicine, University of Pittsburgh, Pittsburgh, PA 15261.
Allyson F O'DonnellDepartment of Biological Sciences, University of Pittsburgh, PA 15260.ORCID 0000-0003-0966-288X

Funding

Alpha-catenin function in cardiomyocyte adhesion and cytoskeletal organizationR01HL127711 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KWIATKOWSKI, ADAM VINCENT · 2016 to 2024
$3.5M
Modulating Hsp70-dependent proteostasis in Alzheimer's DiseaseR35GM131732 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI JEFFREY L. BRODSKY · 2019 to 2026
$3.4M
NHLBI NIH HHS R01 HL127711NIGMS NIH HHS R35 GM131732
6 · The paper itself

Abstract

Spatial and temporal tracking of fluorescent proteins (FPs) in live cells permits visualization of proteome remodeling in response to extracellular cues. Historically, protein dynamics during trafficking have been visualized using constitutively active FPs fused to proteins of interest. While powerful, such FPs label all cellular pools of a protein, potentially masking the dynamics of select subpopulations. To help study protein subpopulations, bioconjugate tags, including the fluorogen activation proteins (FAPs), were developed. FAPs are comprised of two components: a single-chain antibody (SCA) fused to the protein of interest and a malachite-green (MG) derivative, which fluoresces only when bound to the SCA. Importantly, the MG derivatives can be either cell-permeant or -impermeant, thus permitting isolated detection of SCA-tagged proteins at the cell surface and facilitating quantitative endocytic measures. To expand FAP use in yeast, we optimized the SCA for yeast expression, created FAP-tagging plasmids, and generated FAP-tagged organelle markers. To demonstrate FAP efficacy, we coupled the SCA to the yeast G-protein coupled receptor Ste3. We measured Ste3 endocytic dynamics in response to pheromone and characterized

Indexed as

Protein TransportSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsEndocytosisFluorescent DyesGreen Fluorescent ProteinsLuminescent ProteinsRosaniline DyesSingle-Chain AntibodiesFluorescent DyesGreen Fluorescent ProteinsLuminescent Proteinsmalachite greenRosaniline DyesSaccharomyces cerevisiae ProteinsSingle-Chain Antibodies

Identifiers

PMID38809589
PMCPMC11244157

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.