Evidence map›Paper›PMID 38806591›Full record

ArticleScientific reports2024

Temperature-dependent iron motion in extremophile rubredoxins - no need for 'corresponding states'.

Francis E Jenney, Hongxin Wang, Simon J George, Jin Xiong, Yisong Guo, Leland B Gee, Juan José Marizcurrena, Susana Castro-Sowinski, Anna Staskiewicz, Yoshitaka Yoda and 7 more

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Francis E JenneyGeorgia Campus, Philadelphia College of Osteopathic Medicine, Suwanee, GA, 30024, USA.
Hongxin WangSETI Institute, Mountain View, CA, 94043, USA.
Simon J GeorgeSETI Institute, Mountain View, CA, 94043, USA.
Jin XiongDepartment of Chemistry, Carnegie Mellon University, Pittsburgh, PA, 15213, USA.
Yisong GuoDepartment of Chemistry, Carnegie Mellon University, Pittsburgh, PA, 15213, USA.
Leland B GeeLCLS, SLAC National Laboratory, Stanford, CA, 94025, USA.
Juan José MarizcurrenaUniversidad de La República, Montevideo, Uruguay.
Susana Castro-SowinskiUniversidad de La República, Montevideo, Uruguay.
Anna StaskiewiczGeorgia Campus, Philadelphia College of Osteopathic Medicine, Suwanee, GA, 30024, USA.
Yoshitaka YodaPrecision Spectroscopy Division, SPring-8/JASRI, Sayo, Hyogo, 679-5198, Japan.
Michael Y HuAdvanced Photon Source, Argonne National Laboratory, Lemont, IL, 60439, USA.
Kenji TamasakuRIKEN/SPring-8 Center, Hyogo, 679-5148, Japan.
Nobumoto NagasawaPrecision Spectroscopy Division, SPring-8/JASRI, Sayo, Hyogo, 679-5198, Japan.
Lei LiSynchrotron Radiation Research Center, Hyogo, 679-5165, Japan.
Hiroaki MatsuuraRIKEN/SPring-8 Center, Hyogo, 679-5148, Japan.
Tzanko DoukovSSRL, SLAC National Laboratory, Stanford, CA, 94025, USA.
Stephen P CramerSETI Institute, Mountain View, CA, 94043, USA. spjcramer@mac.com.

Funding

X-Ray Raman and Vibrational Mossbauer of MetalloproteinsR01GM065440 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI CRAMER, STEPHEN P. · 2002 to 2025
$7.3M
Elucidate Mechanisms of Quinolone Alkaloid Biosynthesis via Iron(II)/2-Oxoglutarate Dependent Enzymes: Diverse, but Controlled ReactivityR01GM125924 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI Yisong Guo · 2018 to 2026
$3.3M
NIGMS NIH HHS R01 GM065440NIGMS NIH HHS R01 GM125924NIH HHS GM-125924NIH HHS GM-65440NSF MCB-2149122
6 · The paper itself

Abstract

Extremophile organisms are known that can metabolize at temperatures down to - 25 °C (psychrophiles) and up to 122 °C (hyperthermophiles). Understanding viability under extreme conditions is relevant for human health, biotechnological applications, and our search for life elsewhere in the universe. Information about the stability and dynamics of proteins under environmental extremes is an important factor in this regard. Here we compare the dynamics of small Fe-S proteins - rubredoxins - from psychrophilic and hyperthermophilic microorganisms, using three different nuclear techniques as well as molecular dynamics calculations to quantify motion at the Fe site. The theory of 'corresponding states' posits that homologous proteins from different extremophiles have comparable flexibilities at the optimum growth temperatures of their respective organisms. Although 'corresponding states' would predict greater flexibility for rubredoxins that operate at low temperatures, we find that from 4 to 300 K, the dynamics of the Fe sites in these homologous proteins are essentially equivalent.

Indexed as

ExtremophilesIronRubredoxinsMolecular Dynamics SimulationTemperatureIronRubredoxinsCorresponding StatesExtremophileHyperthermophileIron-SulfurPsychrophileRubredoxin

Identifiers

PMID38806591
PMCPMC11133467

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.