Evidence map›Paper›PMID 38806518›Full record

ArticleNature communications2024

Regiodivergent biosynthesis of bridged bicyclononanes.

Lukas Ernst, Hui Lyu, Pi Liu, Christian Paetz, Hesham M B Sayed, Tomke Meents, Hongwu Ma, Ludger Beerhues, Islam El-Awaad, Benye Liu

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Reverse prenylation in plants by non-canonical aromatic prenyltransferases.The Plant journal : for cell and molecular biology · 2025
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Lukas ErnstTechnische Universität Braunschweig, Institute of Pharmaceutical Biology, Braunschweig, Germany. lukas.ernst@tu-braunschweig.de.ORCID http://orcid.org/0009-0002-2629-1013
Hui LyuMax Planck Institute for Chemical Ecology, NMR/Biosynthesis Group, Jena, Germany.ORCID http://orcid.org/0000-0002-6997-5215
Pi LiuChinese Academy of Sciences, Tianjin Institute of Industrial Biotechnology, Biodesign Center, Key Laboratory of Engineering Biology for Low-carbon Manufacturing, Tianjin, China.ORCID http://orcid.org/0000-0001-5064-3053
Christian PaetzMax Planck Institute for Chemical Ecology, NMR/Biosynthesis Group, Jena, Germany.ORCID http://orcid.org/0000-0002-5776-7574
Hesham M B SayedTechnische Universität Braunschweig, Institute of Pharmaceutical Biology, Braunschweig, Germany.
Tomke MeentsTechnische Universität Braunschweig, Institute of Pharmaceutical Biology, Braunschweig, Germany.ORCID http://orcid.org/0009-0003-4562-719X
Hongwu MaChinese Academy of Sciences, Tianjin Institute of Industrial Biotechnology, Biodesign Center, Key Laboratory of Engineering Biology for Low-carbon Manufacturing, Tianjin, China.ORCID http://orcid.org/0000-0001-5325-2314
Ludger BeerhuesTechnische Universität Braunschweig, Institute of Pharmaceutical Biology, Braunschweig, Germany.ORCID http://orcid.org/0000-0002-2147-2731
Islam El-AwaadTechnische Universität Braunschweig, Institute of Pharmaceutical Biology, Braunschweig, Germany. islam.elawaad@tu-braunschweig.de.ORCID http://orcid.org/0000-0002-2260-429X
Benye LiuTechnische Universität Braunschweig, Institute of Pharmaceutical Biology, Braunschweig, Germany. b.liu@tu-braunschweig.de.ORCID http://orcid.org/0000-0001-8527-565X

Funding

Deutsche Forschungsgemeinschaft (German Research Foundation) Li 3400/4-1
6 · The paper itself

Abstract

Medicinal compounds from plants include bicyclo[3.3.1]nonane derivatives, the majority of which are polycyclic polyprenylated acylphloroglucinols (PPAPs). Prototype molecules are hyperforin, the antidepressant constituent of St. John's wort, and garcinol, a potential anticancer compound. Their complex structures have inspired innovative chemical syntheses, however, their biosynthesis in plants is still enigmatic. PPAPs are divided into two subclasses, named type A and B. Here we identify both types in Hypericum sampsonii plants and isolate two enzymes that regiodivergently convert a common precursor to pivotal type A and B products. Molecular modelling and substrate docking studies reveal inverted substrate binding modes in the two active site cavities. We identify amino acids that stabilize these alternative binding scenarios and use reciprocal mutagenesis to interconvert the enzymatic activities. Our studies elucidate the unique biochemistry that yields type A and B bicyclo[3.3.1]nonane cores in plants, thereby providing key building blocks for biotechnological efforts to sustainably produce these complex compounds for preclinical development.

Indexed as

HypericumAlkanesBridged Bicyclo CompoundsCatalytic DomainModels, MolecularMolecular Docking SimulationPhloroglucinolPlant ProteinsTerpenesAlkanesBridged Bicyclo CompoundsPhloroglucinolPlant ProteinsTerpenes

Identifiers

PMID38806518
PMCPMC11133429

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.