ArticlePlant biotechnology journal2024
DeepCCR: large-scale genomics-based deep learning method for improving rice breeding.
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Article in Plant biotechnology journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
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26citing papers in PubMed
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Who cites it
26 citing papers in PubMed.
- Mul-PheG2P: decoupled learning and prediction-space fusion enables robust and interpretable multi-phenotype genomic prediction.The New phytologist · 2026Article
- BiMSGP: A Bidirectional Mamba-Based Model for Scalable and Accurate Genomic Prediction in Plants.Genes · 2026Article
- Genomic prediction vs. gene-based crop models: a case study on rice trait prediction.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Two telomere-to-telomere Nelumbo genome assemblies reveal domestication history and empower precision breeding.Nature communications · 2026Article
- Robustly enhancing crop genomic prediction accuracy through ensemble learning and iterative optimization.Nature communications · 2026Article
- DNAwhisper: An Integrated Deep Learning Pyramidal Framework for Multi-Trait Genomic Prediction and Adaptive Marker Prioritisation.Plant biotechnology journal · 2026Article
- CLCNet: a contrastive learning and chromosome-aware network for genomic prediction in plants.Briefings in bioinformatics · 2026Article
- MeNet: A mixed-effect deep neural network for multi-environment genomic prediction of agronomic traits.Plant communications · 2026Article
- MoEGP: an efficient crop genomic prediction approach based on the mixture of experts network.Plant methods · 2026Article
- Mining genes, genomic selection and simulation breeding on hundred-seed weight using a four-way RIL population.Frontiers in plant science · 2026Article
- Construction and optimization of a genomic selection model for total sugar content in tobacco.Frontiers in genetics · 2026Article
- Benchmarking hyperparameter optimization strategies for crop genomic prediction.Frontiers in genetics · 2026Article
- Geographic Divergence and Putative Candidate Gene Discovery of Rice Grain Quality in China.Rice (New York, N.Y.) · 2025Article
- Accelerated breeding modernization: a global blueprint for driving genetic gains, climate resilience, and food security in rice.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Review
- Article
- Next-generation translational genomics for developing future crops.Functional & integrative genomics · 2025Review
- Rice3KGS: A powerful web platform and database for large-scale genome selection.Plant communications · 2025Article
- Fast-forwarding plant breeding with deep learning-based genomic prediction.Journal of integrative plant biology · 2025Review
- PhytoCluster: a generative deep learning model for clustering plant single-cell RNA-seq data.aBIOTECH · 2025Article
- Machine Learning-Based identification of resistance genes associated with sunflower broomrape.Plant methods · 2025Article
Corrections and comments
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Authors and funding
15 authors.
Xiaoding Ma *State Key Laboratory of Crop Gene Resources and Breeding, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.ORCID https://orcid.org/0000-0002-3623-4680
Hao Wang *State Key Laboratory of Crop Gene Resources and Breeding, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.
Shengyang Wu *Bokaisen Biotechnology Ltd., Beijing, China.
Bing HanState Key Laboratory of Crop Gene Resources and Breeding, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.
Di CuiState Key Laboratory of Crop Gene Resources and Breeding, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.
Jin LiuJiangxi Research Center of Crop Germplasm Resources, Rice Research Institute, Jiangxi Academy of Agricultural Sciences, Nanchang, China.
Qiang ZhangJilin Provincial Laboratory of Crop Germplasm Resources, Rice Research Institute, Jilin Academy of Agricultural Sciences, Changchun, China.
Xiuzhong XiaGuangxi Key Laboratory of Rice Genetics and Breeding, Rice Research Institute, Guangxi Academy of Agricultural Sciences, Nanning, China.
Peng SongNational Key Laboratory of Crop Genetic Improvement, College of Plant Science & Technology, Huazhong Agricultural University, Wuhan, China.
Cuifeng TangKey Lab of Southwestern Crop Gene Resources and Germplasm Innovation, Biotechnology and Germplasm Resources Institute, Kunming, China.
Leiyue GengInstitute of Coastal Agriculture, Hebei Academy of Agriculture and Forestry Sciences, Tangshan, China.
Yaolong YangState Key Laboratory of Rice Biology and Breeding, China National Rice Research Institute, Hangzhou, China.
Shen YanState Key Laboratory of Crop Gene Resources and Breeding, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.
Kunneng ZhouAnhui Province Key Laboratory of Rice Germplasm Innovation and Molecular Improvement, Rice Research Institute, Anhui Academy of Agricultural Sciences, Hefei, China.
Longzhi HanState Key Laboratory of Crop Gene Resources and Breeding, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.
Funding
Agricultural Science and Technology Innovation Program of the Chinese Academy of Agricultural SciencesNational Key Research and Development Program of China 2021YFD1200500STI 2030-Major Projects 2022ZD04017
Abstract
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Indexed as
Chinese cultivated rice populationconvolutional neural networkgenomic selectionyield trait
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Read underepoch 390
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.