Evidence map›Paper›PMID 38805330›Full record

ArticleIEEE/ACM transactions on computational biology and bioinformatics

Circular Clustering With Polar Coordinate Reconstruction.

Xiaoxiao Sun, Paul Sajda

Abstract read
In one paragraph

Article in IEEE/ACM transactions on computational biology and bioinformatics. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Xiaoxiao Sun
Paul Sajda

Funding

EEG/fMRI Controlled TMS Real-time Neural Feedback in Anti-Depressive TreatmentR33MH106775 · NIMH · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI BROWN, TRUMAN R · 2018 to 2020
$2.3M
EEG/fMRI Controlled TMS Real-time Neural Feedback in Anti-Depressive TreatmentR21MH106775 · NIMH · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI BROWN, TRUMAN R · 2015 to 2016
$1.4M
NIMH NIH HHS R21 MH106775NIMH NIH HHS R33 MH106775
6 · The paper itself

Abstract

There is a growing interest in characterizing circular data found in biological systems. Such data are wide-ranging and varied, from the signal phase in neural recordings to nucleotide sequences in round genomes. Traditional clustering algorithms are often inadequate due to their limited ability to distinguish differences in the periodic component θ. Current clustering schemes for polar coordinate systems have limitations, such as being only angle-focused or lacking generality. To overcome these limitations, we propose a new analysis framework that utilizes projections onto a cylindrical coordinate system to represent objects in a polar coordinate system optimally. Using the mathematical properties of circular data, we show that our approach always finds the correct clustering result within the reconstructed dataset, given sufficient periodic repetitions of the data. This framework is generally applicable and adaptable to most state-of-the-art clustering algorithms. We demonstrate on synthetic and real data that our method generates more appropriate and consistent clustering results than standard methods. In summary, our proposed analysis framework overcomes the limitations of existing polar coordinate-based clustering methods and provides an accurate and efficient way to cluster circular data.

Indexed as

AlgorithmsComputational BiologyAnimalsCluster AnalysisHumans

Identifiers

PMID38805330
PMCPMC11568864

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.