Evidence map›Paper›PMID 38805281›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

Long noncoding RNA LIRIL2R modulates FOXP3 levels and suppressive function of human CD4

Syed Bilal Ahmad Andrabi, Ubaid Ullah Kalim, Senthil Palani, Mohd Moin Khan, Meraj Hasan Khan, Jimmy Fagersund, Julius Orpana, Niklas Paulin, Kedar Batkulwar, Sini Junttila and 13 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Long noncoding RNA LIRIL2R modulates FOXP3 levels and suppressive function of human CD4Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Syed Bilal Ahmad Andrabi *Turku Bioscience Centre, University of Turku and Åbo Akademi University, 20520, Turku, Finland.ORCID 0000-0003-3009-0425
Ubaid Ullah Kalim *Turku Bioscience Centre, University of Turku and Åbo Akademi University, 20520, Turku, Finland.ORCID 0000-0002-2539-2296
Senthil PalaniTurku Bioscience Centre, University of Turku and Åbo Akademi University, 20520, Turku, Finland.ORCID 0000-0001-7435-5398
Mohd Moin KhanTurku Bioscience Centre, University of Turku and Åbo Akademi University, 20520, Turku, Finland.
Meraj Hasan KhanTurku Bioscience Centre, University of Turku and Åbo Akademi University, 20520, Turku, Finland.
Jimmy FagersundTurku Bioscience Centre, University of Turku and Åbo Akademi University, 20520, Turku, Finland.ORCID 0009-0002-6557-0920
Julius OrpanaTurku Bioscience Centre, University of Turku and Åbo Akademi University, 20520, Turku, Finland.ORCID 0000-0002-9144-5296
Niklas PaulinTurku Bioscience Centre, University of Turku and Åbo Akademi University, 20520, Turku, Finland.ORCID 0000-0002-6902-0101
Kedar BatkulwarTurku Bioscience Centre, University of Turku and Åbo Akademi University, 20520, Turku, Finland.ORCID 0000-0002-4115-7958
Sini JunttilaTurku Bioscience Centre, University of Turku and Åbo Akademi University, 20520, Turku, Finland.ORCID 0000-0003-3754-5584
Tanja BuchacherTurku Bioscience Centre, University of Turku and Åbo Akademi University, 20520, Turku, Finland.
Toni GrönroosTurku Bioscience Centre, University of Turku and Åbo Akademi University, 20520, Turku, Finland.
Lea ToikkaTurku Bioscience Centre, University of Turku and Åbo Akademi University, 20520, Turku, Finland.ORCID 0000-0002-4257-7022
Tea AmmunetTurku Bioscience Centre, University of Turku and Åbo Akademi University, 20520, Turku, Finland.ORCID 0000-0003-0063-4401
Partho SenTurku Bioscience Centre, University of Turku and Åbo Akademi University, 20520, Turku, Finland.ORCID 0000-0003-0475-2763
Matej OrešičTurku Bioscience Centre, University of Turku and Åbo Akademi University, 20520, Turku, Finland.
Venla KumpulainenTurku Bioscience Centre, University of Turku and Åbo Akademi University, 20520, Turku, Finland.
Johanna E E TuomistoTurku Bioscience Centre, University of Turku and Åbo Akademi University, 20520, Turku, Finland.
Rahul SinhaInstitute for Stem Cell Biology and Regenerative Medicine, Stanford University, Stanford, CA 94305.ORCID 0000-0001-7511-0798
Alexander MarsonGladstone-University of California San Francisco Institute of Genomic Immunology, San Francisco, CA 94158.ORCID 0000-0002-2734-5776
Omid RasoolTurku Bioscience Centre, University of Turku and Åbo Akademi University, 20520, Turku, Finland.ORCID 0000-0002-1286-4725
Laura L EloTurku Bioscience Centre, University of Turku and Åbo Akademi University, 20520, Turku, Finland.ORCID 0000-0001-5648-4532
Riitta LahesmaaTurku Bioscience Centre, University of Turku and Åbo Akademi University, 20520, Turku, Finland.

Funding

EC | ERC | HORIZON EUROPE European Research Council (ERC) 677943 955321Novo Nordisk Fonden (NNF) NNF19OC0057218Research Council of Finland (AKA) 292335 294337 292482 319280 329277 331793 335435 250114 310561 314443 329278 335434 335611
6 · The paper itself

Abstract

Regulatory T cells (Tregs) are central in controlling immune responses, and dysregulation of their function can lead to autoimmune disorders or cancer. Despite extensive studies on Tregs, the basis of epigenetic regulation of human Treg development and function is incompletely understood. Long intergenic noncoding RNAs (lincRNA)s are important for shaping and maintaining the epigenetic landscape in different cell types. In this study, we identified a gene on the chromosome 6p25.3 locus, encoding a lincRNA, that was up-regulated during early differentiation of human Tregs. The lincRNA regulated the expression of interleukin-2 receptor alpha (IL2RA), and we named it the lincRNA regulator of IL2RA (LIRIL2R). Through transcriptomics, epigenomics, and proteomics analysis of LIRIL2R-deficient Tregs, coupled with global profiling of LIRIL2R binding sites using chromatin isolation by RNA purification, followed by sequencing, we identified IL2RA as a target of LIRIL2R. This nuclear lincRNA binds upstream of the

Indexed as

Forkhead Transcription FactorsInterleukin-2 Receptor alpha SubunitRNA, Long NoncodingT-Lymphocytes, RegulatoryCell DifferentiationEpigenesis, GeneticGene Expression RegulationHumansForkhead Transcription FactorsFOXP3 protein, humanIL2RA protein, humanInterleukin-2 Receptor alpha SubunitRNA, Long NoncodingFOXP3IL2RALIRIL2Rlong noncoding RNAregulatory T cells

Identifiers

PMID38805281
PMCPMC11161746

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.