Evidence map›Paper›PMID 38804365›Full record

ArticleEpigenomes2024

Deciphering the Diversity in Bacterial Transporters That Salvage Queuosine Precursors.

Samia Quaiyum, Yifeng Yuan, Paul J Kuipers, Maria Martinelli, Marshall Jaroch, Valérie de Crécy-Lagard

Abstract read
In one paragraph

Article in Epigenomes, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Compendium of RNA modifications for bacterial stress adaptation.Microbiology and molecular biology reviews : MMBR · 2026
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Queuosine salvage inMicrobiology (Reading, England) · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Samia QuaiyumDepartment of Microbiology and Cell Science, University of Florida, Gainesville, FL 32611, USA.
Yifeng YuanDepartment of Microbiology and Cell Science, University of Florida, Gainesville, FL 32611, USA.ORCID 0000-0002-9549-2698
Paul J KuipersDepartment of Microbiology and Cell Science, University of Florida, Gainesville, FL 32611, USA.
Maria MartinelliDepartment of Microbiology and Cell Science, University of Florida, Gainesville, FL 32611, USA.
Marshall JarochDepartment of Microbiology and Cell Science, University of Florida, Gainesville, FL 32611, USA.
Valérie de Crécy-LagardDepartment of Microbiology and Cell Science, University of Florida, Gainesville, FL 32611, USA.ORCID 0000-0002-9955-3785

Funding

Synthesis and function of Queuosine in BacteriaR01GM070641 · NIGMS · UNIVERSITY OF FLORIDA · PI DE CRECY-LAGARD, VALERIE A · 2006 to 2023
$5.3M
NIGMS NIH HHS GM70641NIGMS NIH HHS R01 GM070641
6 · The paper itself

Abstract

Queuosine (Q) is a modification of the wobble base of tRNA harboring GUN anticodons with roles in decoding accuracy and efficiency. Its synthesis is complex with multiple enzymatic steps, and several pathway intermediates can be salvaged. The only two transporter families known to salvage Q precursors are QPTR/COG1738 and QrtT/QueT. Analyses of the distribution of known Q synthesis and salvage genes in human gut and oral microbiota genomes have suggested that more transporter families remain to be found and that Q precursor exchanges must occur within the structured microenvironments of the mammalian host. Using physical clustering and fusion-based association with Q salvage genes, candidate genes for missing transporters were identified and five were tested experimentally by complementation assays in

Indexed as

biogeographyphylogenomicqueuinequeuosinesalvagetransportertRNA

Identifiers

PMID38804365
PMCPMC11130926

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.