Evidence map›Paper›PMID 38803492›Full record

ArticleFrontiers in immunology2024

Studying the cellular basis of small bowel enteropathy using high-parameter flow cytometry in mouse models of primary antibody deficiency.

Ahmed D Mohammed, Ryan A W Ball, Amy Jolly, Prakash Nagarkatti, Mitzi Nagarkatti, Jason L Kubinak

Abstract read
In one paragraph

Article in Frontiers in immunology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Ahmed D MohammedPathology, Microbiology, and Immunology Department, University of South Carolina School of Medicine, Columbia, SC, United States.
Ryan A W BallPathology, Microbiology, and Immunology Department, University of South Carolina School of Medicine, Columbia, SC, United States.
Amy JollyPathology, Microbiology, and Immunology Department, University of South Carolina School of Medicine, Columbia, SC, United States.
Prakash NagarkattiPathology, Microbiology, and Immunology Department, University of South Carolina School of Medicine, Columbia, SC, United States.
Mitzi NagarkattiPathology, Microbiology, and Immunology Department, University of South Carolina School of Medicine, Columbia, SC, United States.
Jason L KubinakPathology, Microbiology, and Immunology Department, University of South Carolina School of Medicine, Columbia, SC, United States.

Funding

Targeting early ceramide elevation in pre-symptomatic eczemaP20GM103641 · NIGMS · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI ENOS, REILLY, NAGARKATTI, PRAKASH S · 2012 to 2023
$20.7M
B-cell-intrinsic MHCII Signaling is a Diversifying Force of Selection on IgA Repertoires and the Gut MicrobiotaR01AI155887 · NIAID · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI KUBINAK, JASON L · 2021 to 2025
$2.1M
BD FACSymphony A5 Cell AnalyzerS10OD032271 · OD · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI KUBINAK, JASON L, PRICE, ROBERT L · 2022 to 2022
$513k
Mechanism of MHC heterozygote advantage during anti-commensal germinal center B cell selectionR21AI142409 · NIAID · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI KUBINAK, JASON L · 2019 to 2020
$410k
Humoral immunodeficiency disrupts bile-acid-induced immune tolerance in the small intestineR56AI162986 · NIAID · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI KUBINAK, JASON L · 2022 to 2022
$247k
NIAID NIH HHS R01 AI155887NIAID NIH HHS R21 AI142409NIAID NIH HHS R56 AI162986NIGMS NIH HHS P20 GM103641NIH HHS S10 OD032271
6 · The paper itself

Abstract

Background: Primary immunodeficiencies are heritable defects in immune system function. Antibody deficiency is the most common form of primary immunodeficiency in humans, can be caused by abnormalities in both the development and activation of B cells, and may result from B-cell-intrinsic defects or defective responses by other cells relevant to humoral immunity. Inflammatory gastrointestinal complications are commonly observed in antibody-deficient patients, but the underlying immune mechanisms driving this are largely undefined. Methods: In this study, several mouse strains reflecting a spectrum of primary antibody deficiency (IgA Results: Results from our experiments indicate that the severity of primary antibody deficiency positively correlates with the degree of immune dysregulation that can be expected to develop in an individual. In the SI of mice, immune dysregulation is primarily explained by defective homeostatic responses in T cell and invariant natural killer-like T (iNKT) cell subsets. These defects are strongly correlated with abnormalities in the balance between protein (MHCII-mediated) versus lipid (CD1d-mediated) antigen presentation by intestinal epithelial cells (IECs) and intestinal stem cells (ISCs), respectively. Conclusions: Multivariate statistical approaches can be used to obtain quantifiable estimates of immune dysregulation based on high-parameter flow cytometry readouts of immune function. Using one such estimate, we reveal a previously unrecognized tradeoff between iNKT cell activation and type 1 immunity that underlies disease in the small bowel. The balance between protein/lipid antigen presentation by ISCs may play a crucial role in regulating this balance and thereby suppressing inflammatory disease in the small bowel.

Indexed as

Disease Models, AnimalFlow CytometryIntestine, SmallAnimalsB-LymphocytesIntestinal DiseasesMiceMice, Inbred C57BLMice, KnockoutPrimary Immunodeficiency Diseaseshigh-dimensional flow cytometryhumoral immunityimmune dysregulationprimary antibody deficiencysmall intestine

Identifiers

PMID38803492
PMCPMC11128607

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.