Evidence map›Paper›PMID 38802858›Full record

ArticleJournal of translational medicine2024

Identification of epigenetic silencing of the SFRP2 gene in colorectal cancer as a clinical biomarker and molecular significance.

Hatim Boughanem, Jesús Pilo, Libia Alejandra García-Flores, Isabel Arranz, María Ramos-Fernandez, María Ortega-Castan, Ana B Crujeiras, Juan Sandoval, Manuel Macias-Gonzalez

Abstract read
In one paragraph

Article in Journal of translational medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Hatim Boughanem *Department of Endocrinology and Nutrition, Virgen de la Victoria University Hospital, Malaga, Spain.
Jesús Pilo *Department of Endocrinology and Nutrition, Virgen de la Victoria University Hospital, Malaga, Spain.
Libia Alejandra García-FloresDepartment of Endocrinology and Nutrition, Virgen de la Victoria University Hospital, Malaga, Spain.
Isabel ArranzDivision of Anatomical Pathology, Hospital Universitario Virgen de la Victoria, 29010, Malaga, Spain. isabellanz@yahoo.es.
María Ramos-FernandezUnidad de Gestion Clinica Cirugía General y del Aparato Digestivo, Virgen de la Victoria University, 29010, Malaga, Spain.
María Ortega-CastanUnidad de Gestion Clinica Cirugía General y del Aparato Digestivo, Virgen de la Victoria University, 29010, Malaga, Spain.
Ana B CrujeirasSpanish Biomedical Research Center in Physiopathology of Obesity and Nutrition (CIBERObn), Instituto de Salud Carlos III, Madrid, Spain.
Juan Sandoval *Epigenomics Core Facility and Biomarkers and Precision Medicine Unit, Health Research Institute La Fe, 46026, Valencia, Spain.
Manuel Macias-Gonzalez *Department of Endocrinology and Nutrition, Virgen de la Victoria University Hospital, Malaga, Spain. mmacias.manuel@gmail.com.

Funding

Consejería de Conocimiento, Investigación y Universidad, Junta de Andalucía PY20-01270Consejería de Salud y Consumo, Junta de Andalucía C-0029-2014Consejería de Salud y Consumo, Junta de Andalucía RC-0001-2018Instituto de Salud Carlos III CD22/00053ISCIII-FIS PI18/01399ISCIII-FIS PI21/00633
6 · The paper itself

Abstract

backgroundSeveral studies have suggested secreted frizzled-related protein 2 (SFRP2) gene as a potential clinical biomarker in colorectal cancer (CRC). However, its diagnostic role remains unclear. In this study, we aimed to investigate the significance of SFRP2 methylation levels in a large cohort of biological specimens (including blood, adipose and colonic tissues) from patients with CRC, thereby potentially identifying new biomarker utility.

methodsWe examined the expression (by qPCR) and methylation status (by 450 K DNA array and DNA pyrosequencing) of the SFRP2 gene in healthy participants (N = 110, aged as 53.7 (14.2), 48/62 males/females) and patients with CRC (N = 85, aged 67.7 (10.5), 61/24 males/females), across different biological tissues, and assessing its potential as a biomarker for CRC. Additionally, we investigated the effect of recombinant human SFRP2 (rhSFRP2) as a therapeutic target, on cell proliferation, migration, and the expression of key genes related to carcinogenesis and the Wnt pathway.

resultsOur findings revealed that SFRP2 promoter methylation in whole blood could predict cancer stage (I + II vs. III + IV) (AUC = 0.653), lymph node invasion (AUC = 0.692), and CRC recurrence (AUC = 0.699) in patients with CRC (all with p < 0.05). Furthermore, we observed a global hypomethylation of SFRP2 in tumors compared to the adjacent area (p < 0.001). This observation was validated in the TCGA-COAD and TCGA-READ cohorts, demonstrating overall hypermethylation (both with p < 0.001) and low expression (p < 0.001), as shown in publicly available scRNA-Seq data. Notably, neoadjuvant-treated CRC patients exhibited lower SFRP2 methylation levels compared to untreated patients (p < 0.05) and low promoter SFRP2 methylation in untreated patients was associated with poor overall survival (p < 0.05), when compared to high methylation. Finally, treatment with 5 µg of rhSFRP2 treatment in CRC cells (HCT116 cells) inhibited cell proliferation (p < 0.001) and migration (p < 0.05), and downregulated the expression of AXIN2 (p < 0.01), a gene involved in Wnt signaling pathway.

conclusionsThese findings establish promoter methylation of the SFRP2 gene as a prognostic candidate in CRC when assessed in blood, and as a therapeutic prognostic candidate in tumors, potentially valuable in clinical practice. SFRP2 also emerges as a therapeutic option, providing new clinical and therapeutical avenues.

Indexed as

Biomarkers, TumorColorectal NeoplasmsDNA MethylationEpigenesis, GeneticGene Expression Regulation, NeoplasticGene SilencingMembrane ProteinsPromoter Regions, GeneticAgedCell Line, TumorCell MovementCell ProliferationFemaleHumansMaleMiddle AgedBiomarkers, TumorMembrane ProteinsSecreted Frizzled-Related ProteinsSFRP2 protein, humanColorectal cancer biomarkersDNA methylationPromoter methylationSRFP2Wnt signaling pathway

Identifiers

PMID38802858
PMCPMC11129357

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.