Evidence map›Paper›PMID 38802389›Full record

ArticleNature communications2024

Enhanced surface colonisation and competition during bacterial adaptation to a fungus.

Anne Richter, Felix Blei, Guohai Hu, Jan W Schwitalla, Carlos N Lozano-Andrade, Jiyu Xie, Scott A Jarmusch, Mario Wibowo, Bodil Kjeldgaard, Surabhi Surabhi and 12 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. Review
  5. Review
  6. Article
  7. Mechanisms ofAnimal nutrition (Zhongguo xu mu shou yi xue hui) · 2026
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  9. EngineeredBioactive materials · 2025
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  15. Article
  16. Article
  17. Frontiers in plant science · 2025
    Article
  18. Article
  19. Review
  20. Taxonomy ofmSystems · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Anne RichterBacterial Interactions and Evolution Group, DTU Bioengineering, Technical University of Denmark, Kgs Lyngby, Denmark.
Felix BleiTerrestrial Biofilms Group, Institute of Microbiology, Friedrich Schiller University Jena, Jena, Germany.ORCID http://orcid.org/0009-0004-3190-8684
Guohai HuBacterial Interactions and Evolution Group, DTU Bioengineering, Technical University of Denmark, Kgs Lyngby, Denmark.ORCID http://orcid.org/0000-0003-2756-8328
Jan W SchwitallaTerrestrial Biofilms Group, Institute of Microbiology, Friedrich Schiller University Jena, Jena, Germany.
Carlos N Lozano-AndradeBacterial Interactions and Evolution Group, DTU Bioengineering, Technical University of Denmark, Kgs Lyngby, Denmark.ORCID http://orcid.org/0000-0003-2805-4505
Jiyu XieInstitute of Biology, Leiden University, Leiden, The Netherlands.
Scott A JarmuschNatural Product Discovery Group, DTU Bioengineering, Technical University of Denmark, Kgs Lyngby, Denmark.ORCID http://orcid.org/0000-0002-1021-1608
Mario WibowoNatural Product Discovery Group, DTU Bioengineering, Technical University of Denmark, Kgs Lyngby, Denmark.ORCID http://orcid.org/0000-0002-5739-0949
Bodil KjeldgaardBacterial Interactions and Evolution Group, DTU Bioengineering, Technical University of Denmark, Kgs Lyngby, Denmark.
Surabhi SurabhiTerrestrial Biofilms Group, Institute of Microbiology, Friedrich Schiller University Jena, Jena, Germany.
Xinming XuInstitute of Biology, Leiden University, Leiden, The Netherlands.ORCID http://orcid.org/0000-0002-3203-4526
Theresa JautzusTerrestrial Biofilms Group, Institute of Microbiology, Friedrich Schiller University Jena, Jena, Germany.
Christopher B W PhippenNatural Product Discovery Group, DTU Bioengineering, Technical University of Denmark, Kgs Lyngby, Denmark.
Olaf TycNetherlands Institute of Ecology, Wageningen, The Netherlands.ORCID http://orcid.org/0000-0001-9949-0975
Mark ArentshorstInstitute of Biology, Leiden University, Leiden, The Netherlands.
Yue WangChina National GeneBank, BGI-Shenzhen, Shenzhen, China.ORCID http://orcid.org/0000-0003-2103-4237
Paolina GarbevaNetherlands Institute of Ecology, Wageningen, The Netherlands.ORCID http://orcid.org/0000-0002-2359-5719
Thomas Ostenfeld LarsenNatural Product Discovery Group, DTU Bioengineering, Technical University of Denmark, Kgs Lyngby, Denmark.ORCID http://orcid.org/0000-0002-3362-5707
Arthur F J RamInstitute of Biology, Leiden University, Leiden, The Netherlands.ORCID http://orcid.org/0000-0002-2487-8016
Cees A M van den HondelInstitute of Biology, Leiden University, Leiden, The Netherlands.
Gergely MarótiInstitute of Plant Biology, Biological Research Centre, Eötvös Loránd Research Network (ELKH), Szeged, Hungary.
Ákos T KovácsBacterial Interactions and Evolution Group, DTU Bioengineering, Technical University of Denmark, Kgs Lyngby, Denmark. a.t.kovacs@biology.leidenuniv.nl.ORCID http://orcid.org/0000-0002-4465-1636

Funding

Danmarks Grundforskningsfond (Danish National Research Foundation) DNRF137Novo Nordisk Fonden (Novo Nordisk Foundation) NNF19OC0055625Novo Nordisk Fonden (Novo Nordisk Foundation) NNF19SA0059360
6 · The paper itself

Abstract

Bacterial-fungal interactions influence microbial community performance of most ecosystems and elicit specific microbial behaviours, including stimulating specialised metabolite production. Here, we use a co-culture experimental evolution approach to investigate bacterial adaptation to the presence of a fungus, using a simple model of bacterial-fungal interactions encompassing the bacterium Bacillus subtilis and the fungus Aspergillus niger. We find in one evolving population that B. subtilis was selected for enhanced production of the lipopeptide surfactin and accelerated surface spreading ability, leading to inhibition of fungal expansion and acidification of the environment. These phenotypes were explained by specific mutations in the DegS-DegU two-component system. In the presence of surfactin, fungal hyphae exhibited bulging cells with delocalised secretory vesicles possibly provoking an RlmA-dependent cell wall stress. Thus, our results indicate that the presence of the fungus selects for increased surfactin production, which inhibits fungal growth and facilitates the competitive success of the bacterium.

Indexed as

Adaptation, PhysiologicalAspergillus nigerBacillus subtilisLipopeptidesBacterial ProteinsCell WallCoculture TechniquesHyphaeMicrobial InteractionsMutationPeptides, CyclicBacterial ProteinsLipopeptidesPeptides, Cyclicsurfactin peptide

Identifiers

PMID38802389
PMCPMC11130161

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.