Evidence map›Paper›PMID 38802378›Full record

ArticleNature communications2024

Hairpin protein partitioning from the ER to lipid droplets involves major structural rearrangements.

Ravi Dhiman, Rehani S Perera, Chetan S Poojari, Haakon T A Wiedemann, Reinhard Kappl, Christopher W M Kay, Jochen S Hub, Bianca Schrul

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Review
  8. Essential Biology of Lipid Droplets.Annual review of biochemistry · 2025
    Review
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Ravi Dhiman *Medical Biochemistry and Molecular Biology, Center for Molecular Signaling (PZMS), Faculty of Medicine, Saarland University, 66421, Homburg/Saar, Germany.ORCID http://orcid.org/0009-0006-4534-6867
Rehani S Perera *Medical Biochemistry and Molecular Biology, Center for Molecular Signaling (PZMS), Faculty of Medicine, Saarland University, 66421, Homburg/Saar, Germany.ORCID http://orcid.org/0000-0001-8312-5586
Chetan S Poojari *Theoretical Physics and Center for Biophysics, Saarland University, 66123, Saarbrücken, Germany.ORCID http://orcid.org/0000-0001-6575-221X
Haakon T A WiedemannPhysical Chemistry and Chemistry Education, Saarland University, 66123, Saarbrücken, Germany.ORCID http://orcid.org/0000-0002-7130-5149
Reinhard KapplDepartment of Biophysics, Center for Integrative Physiology and Molecular Medicine (CIPMM), Faculty of Medicine, Saarland University, 66421, Homburg/Saar, Germany.
Christopher W M KayPhysical Chemistry and Chemistry Education, Saarland University, 66123, Saarbrücken, Germany.ORCID http://orcid.org/0000-0002-5200-6004
Jochen S HubTheoretical Physics and Center for Biophysics, Saarland University, 66123, Saarbrücken, Germany.ORCID http://orcid.org/0000-0001-7716-1767
Bianca SchrulMedical Biochemistry and Molecular Biology, Center for Molecular Signaling (PZMS), Faculty of Medicine, Saarland University, 66421, Homburg/Saar, Germany. bianca.schrul@uks.eu.ORCID http://orcid.org/0009-0000-4823-2570

Funding

Deutsche Forschungsgemeinschaft (German Research Foundation) CRC 1027 project B7Deutsche Forschungsgemeinschaft (German Research Foundation) CRC1027 project C9Deutsche Forschungsgemeinschaft (German Research Foundation) INST 256/535-1Deutsche Forschungsgemeinschaft (German Research Foundation) INST 256/539-1
6 · The paper itself

Abstract

Lipid droplet (LD) function relies on proteins partitioning between the endoplasmic reticulum (ER) phospholipid bilayer and the LD monolayer membrane to control cellular adaptation to metabolic changes. It has been proposed that these hairpin proteins integrate into both membranes in a similar monotopic topology, enabling their passive lateral diffusion during LD emergence at the ER. Here, we combine biochemical solvent-accessibility assays, electron paramagnetic resonance spectroscopy and intra-molecular crosslinking experiments with molecular dynamics simulations, and determine distinct intramembrane positionings of the ER/LD protein UBXD8 in ER bilayer and LD monolayer membranes. UBXD8 is deeply inserted into the ER bilayer with a V-shaped topology and adopts an open-shallow conformation in the LD monolayer. Major structural rearrangements are required to enable ER-to-LD partitioning. Free energy calculations suggest that such structural transition is unlikely spontaneous, indicating that ER-to-LD protein partitioning relies on more complex mechanisms than anticipated and providing regulatory means for this trans-organelle protein trafficking.

Indexed as

Endoplasmic ReticulumLipid DropletsMolecular Dynamics SimulationAnimalsElectron Spin Resonance SpectroscopyHumansLipid BilayersLipid Droplet Associated ProteinsProtein TransportLipid BilayersLipid Droplet Associated Proteins

Identifiers

PMID38802378
PMCPMC11130287

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.