Evidence map›Paper›PMID 38801311›Full record

ArticleJBRA assisted reproduction2024

Assessment of differentially expressed genes from in vitro matured human oocytes: A bioinformatics approach.

Gabriel Acácio de Moura, Mayara Lobato Lourenço, Yasmim Mendes Rocha, João Pedro Viana Rodrigues, Cristian Vicson Pinheiro, Alice Soares de Queiroz, Eduardo de Paula Miranda, Sebastião Evangelista Torquato, Roberto Nicolete

Abstract read
In one paragraph

Article in JBRA assisted reproduction, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Gabriel Acácio de MouraPostgraduate Program in Pharmaceutical Sciences (PPGCF), Federal University of Ceará (UFC), Fortaleza - Ceará, Brazil.
Mayara Lobato LourençoEvangelista Torquato Human Reproduction Clinic, Fortaleza - Ceará, Brazil.
Yasmim Mendes RochaPostgraduate Program in Pharmaceutical Sciences (PPGCF), Federal University of Ceará (UFC), Fortaleza - Ceará, Brazil.
João Pedro Viana RodriguesPostgraduate Program in Pharmaceutical Sciences (PPGCF), Federal University of Ceará (UFC), Fortaleza - Ceará, Brazil.
Cristian Vicson PinheiroPostgraduate Program in Pharmaceutical Sciences (PPGCF), Federal University of Ceará (UFC), Fortaleza - Ceará, Brazil.
Alice Soares de QueirozPostgraduate degree in natural resources biotechnology, Federal University of Ceará (UFC), Fortaleza - Ceará, Brazil.
Eduardo de Paula MirandaEvangelista Torquato Human Reproduction Clinic, Fortaleza - Ceará, Brazil.
Sebastião Evangelista TorquatoEvangelista Torquato Human Reproduction Clinic, Fortaleza - Ceará, Brazil.
Roberto NicoletePostgraduate Program in Pharmaceutical Sciences (PPGCF), Federal University of Ceará (UFC), Fortaleza - Ceará, Brazil.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveOne of the techniques that has gained much attention is the in vitro maturation of oocytes for patients who use assisted reproduction techniques. However, its results are still inferior to controlled ovarian stimulation methodologies. Understanding the maturation mechanisms based on analyses can help improve this methodology's results. The work aims to identify the central genes differentially expressed in oocytes after in vitro maturation in the germinal vesicle and metaphase II stages.

methodsThis work is a computational analysis. The entire search will be conducted using the Gene Expression Omnibus (GEO) database. To carry out and obtain the data present in the work, an advanced research search was carried out in the GEO database within the period from January 1, 2013, to January 1, 2023. A total of 27 genomic data were available in the GEO database, of which only two were used.

resultsTwo datasets were identified on the Gene Expression Omnibus database platform: registration data GSE158802 and GSE95477. From the analysis, we identified five downregulated and thirty-six upregulated genes; the central genes that correlated with the main gene proteins found were CLTA and PANK1.

conclusionsThere was a differential regulation of gene expression. The most central ones are related to energy capture.

Indexed as

Computational BiologyIn Vitro Oocyte Maturation TechniquesOocytesDatabases, GeneticFemaleGene Expression ProfilingHumansbiologycomputational biologyfertilitygeneoocytereproductive techniques

Identifiers

PMID38801311
PMCPMC11349261

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.