Evidence map›Paper›PMID 38799618›Full record

ArticleBrain communications2024

Utility of intracranial EEG networks depends on re-referencing and connectivity choice.

Haoer Shi, Akash Ranjan Pattnaik, Carlos Aguila, Alfredo Lucas, Nishant Sinha, Brian Prager, Marissa Mojena, Ryan Gallagher, Alexandra Parashos, Leonardo Bonilha and 4 more

Abstract read
In one paragraph

Article in Brain communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Can brain network analyses guide epilepsy surgery?Current opinion in neurology · 2025
    Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Haoer ShiDepartment of Bioengineering, School of Engineering and Applied Sciences, University of Pennsylvania, Philadelphia, PA 19104, USA.
Akash Ranjan PattnaikDepartment of Bioengineering, School of Engineering and Applied Sciences, University of Pennsylvania, Philadelphia, PA 19104, USA.ORCID https://orcid.org/0000-0002-2474-1685
Carlos AguilaDepartment of Bioengineering, School of Engineering and Applied Sciences, University of Pennsylvania, Philadelphia, PA 19104, USA.
Alfredo LucasDepartment of Bioengineering, School of Engineering and Applied Sciences, University of Pennsylvania, Philadelphia, PA 19104, USA.ORCID https://orcid.org/0000-0001-9439-735X
Nishant SinhaCenter for Neuroengineering and Therapeutics, University of Pennsylvania, Philadelphia, PA 19104, USA.ORCID https://orcid.org/0000-0002-2090-4889
Brian PragerCenter for Neuroengineering and Therapeutics, University of Pennsylvania, Philadelphia, PA 19104, USA.
Marissa MojenaCenter for Neuroengineering and Therapeutics, University of Pennsylvania, Philadelphia, PA 19104, USA.
Ryan GallagherCenter for Neuroengineering and Therapeutics, University of Pennsylvania, Philadelphia, PA 19104, USA.ORCID https://orcid.org/0000-0002-1789-9142
Alexandra ParashosDepartment of Neurology, Medical University of South Carolina, Charleston, SC 29425, USA.
Leonardo BonilhaDepartment of Neurology, Emory University, Atlanta, GA 30325, USA.
Ezequiel GleichgerrchtDepartment of Neurology, Emory University, Atlanta, GA 30325, USA.
Kathryn A DavisCenter for Neuroengineering and Therapeutics, University of Pennsylvania, Philadelphia, PA 19104, USA.ORCID https://orcid.org/0000-0002-7020-6480
Brian LittDepartment of Bioengineering, School of Engineering and Applied Sciences, University of Pennsylvania, Philadelphia, PA 19104, USA.
Erin C ConradCenter for Neuroengineering and Therapeutics, University of Pennsylvania, Philadelphia, PA 19104, USA.ORCID https://orcid.org/0000-0001-8910-1817

Funding

Ghost in the Machine: Melding Brain, Computer and BehaviorDP1NS122038 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI LITT, BRIAN · 2020 to 2024
$5.7M
Training Program in Neuroengineering and MedicineT32NS091006 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI Brian Litt · 2015 to 2026
$4.1M
Predicting Epilepsy Surgery Outcomes Using Neural Network ArchitectureR01NS110347 · NINDS · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI BONILHA, LEONARDO F, DRANE, DANIEL L · 2019 to 2023
$3.6M
Optimized Intracranial EEG Targeting in Focal Epilepsy based upon Neuroimaging ConnectomicsR01NS116504 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI DAVIS, KATHRYN ADAMIAK · 2021 to 2025
$3.3M
Guiding epilepsy surgery using network models and Stereo EEGR01NS125137 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI BASSETT, DANIELLE SMITH, LITT, BRIAN · 2022 to 2025
$2.8M
Quantitative interictal networks to localize seizure generatorsK23NS121401 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI Erin Conrad · 2022 to 2026
$1.2M
NINDS NIH HHS DP1 NS122038NINDS NIH HHS K23 NS121401NINDS NIH HHS R01 NS110347NINDS NIH HHS R01 NS116504NINDS NIH HHS R01 NS125137NINDS NIH HHS T32 NS091006
6 · The paper itself

Abstract

Studies of intracranial EEG networks have been used to reveal seizure generators in patients with drug-resistant epilepsy. Intracranial EEG is implanted to capture the epileptic network, the collection of brain tissue that forms a substrate for seizures to start and spread. Interictal intracranial EEG measures brain activity at baseline, and networks computed during this state can reveal aberrant brain tissue without requiring seizure recordings. Intracranial EEG network analyses require choosing a reference and applying statistical measures of functional connectivity. Approaches to these technical choices vary widely across studies, and the impact of these technical choices on downstream analyses is poorly understood. Our objective was to examine the effects of different re-referencing and connectivity approaches on connectivity results and on the ability to lateralize the seizure onset zone in patients with drug-resistant epilepsy. We applied 48 pre-processing pipelines to a cohort of 125 patients with drug-resistant epilepsy recorded with interictal intracranial EEG across two epilepsy centres to generate intracranial EEG functional connectivity networks. Twenty-four functional connectivity measures across time and frequency domains were applied in combination with common average re-referencing or bipolar re-referencing. We applied an unsupervised clustering algorithm to identify groups of pre-processing pipelines. We subjected each pre-processing approach to three quality tests: (i) the introduction of spurious correlations; (ii) robustness to incomplete spatial sampling; and (iii) the ability to lateralize the clinician-defined seizure onset zone. Three groups of similar pre-processing pipelines emerged: common average re-referencing pipelines, bipolar re-referencing pipelines and relative entropy-based connectivity pipelines. Relative entropy and common average re-referencing networks were more robust to incomplete electrode sampling than bipolar re-referencing and other connectivity methods (Friedman test, Dunn-Šidák test

Indexed as

connectivityintracranial EEGpre-processingrelative entropy

Identifiers

PMID38799618
PMCPMC11126314

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.