Evidence map›Paper›PMID 38798844›Full record

SynthesisNarra J2024

A comparative analysis between next-generation sequencing and conventional culture method to detect empyema-associated microorganisms: A systematic review.

Indra Yovi, Nur A Syah, Dewi Anggraini, Arya M Simanjuntak, Zulfa N Hanifah, Aisyah Elliyanti

Abstract readSystematic ReviewComparative Study
In one paragraph

Synthesis in Narra J, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. Clinical Features and Diagnostic Challenges ofInfection and drug resistance · 2026
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Indra YoviDoctoral Program of Biomedicine, Faculty of Medicine, Universitas Andalas, Padang, Indonesia.
Nur A SyahDepartment of Medical Education, Faculty of Medicine, Universitas Andalas, Padang, Indonesia.
Dewi AnggrainiArifin Achmad Hospital, Pekanbaru, Riau, Indonesia.
Arya M SimanjuntakDepartment of Pulmonology, Faculty of Medicine, Universitas Riau, Pekanbaru, Indonesia.
Zulfa N HanifahDepartment of Microbiology, Faculty of Medicine, Universitas Riau, Pekanbaru, Indonesia.
Aisyah ElliyantiDivision of Nuclear Medicine, Department of Radiology, Faculty of Medicine, Universitas Andalas, Padang, Indonesia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Empyema poses a significant global health concern, yet identifying responsible bacteria remains elusive. Recent studies question the efficacy of conventional pleural fluid culture in accurately identifying empyema-causing bacteria. The aim of this study was to compare diagnostic capabilities of next-generation sequencing (NGS) with conventional pleural fluid culture in identifying empyema-causing bacteria. Five databases (Google Scholar, Science Direct, Cochrane, Research Gate, and PubMed) were used to search studies comparing conventional pleural fluid culture with NGS for identifying empyema-causing bacteria using keywords. Positive results identified through conventional pleural fluid culture and NGS were extracted. In addition, bacterial profiles identified by NGS were also documented. Joanna-Briggs Institute (JBI) critical appraisal tool was employed to assess quality of included studies. Descriptive analysis was employed to present outcome of interests. From five databases, three studies, with 354 patients, were included. Findings from three studies showed that NGS outperformed conventional pleural fluid culture in detecting empyema-causing bacteria even in culture-negative samples. Moreover, dominant bacterial profiles identified through NGS included

Indexed as

High-Throughput Nucleotide SequencingBacteriaEmpyema, PleuralHumansculturediagnosticEmpyemametagenomicnext-generation sequencing

Identifiers

PMID38798844
PMCPMC11125311

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.