Evidence map›Paper›PMID 38798545›Full record

ArticlebioRxiv : the preprint server for biology2024

A Postdoctoral Training Program in Bioimage Analysis.

Beth A Cimini, Callum Tromans-Coia, David Stirling, Suganya Sivagurunathan, Rebecca Senft, Pearl Ryder, Esteban Miglietta, Paula Llanos, Nasim Jamali, Barbara Diaz-Rohrer and 4 more

Abstract readPreprint
PubMed Full text at PMC Publisher
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors.

Beth A CiminiImaging Platform, Broad Institute of MIT and Harvard, Cambridge MA, USA.ORCID 0000-0001-9640-9318
Callum Tromans-CoiaImaging Platform, Broad Institute of MIT and Harvard, Cambridge MA, USA.ORCID 0000-0002-5518-8915
David StirlingImaging Platform, Broad Institute of MIT and Harvard, Cambridge MA, USA.ORCID 0000-0001-6802-4103
Suganya SivagurunathanImaging Platform, Broad Institute of MIT and Harvard, Cambridge MA, USA.ORCID 0000-0002-9778-5400
Rebecca SenftImaging Platform, Broad Institute of MIT and Harvard, Cambridge MA, USA.ORCID 0000-0003-0081-4170
Pearl RyderImaging Platform, Broad Institute of MIT and Harvard, Cambridge MA, USA.ORCID 0000-0003-3699-3633
Esteban MigliettaImaging Platform, Broad Institute of MIT and Harvard, Cambridge MA, USA.ORCID 0000-0002-4898-7794
Paula LlanosImaging Platform, Broad Institute of MIT and Harvard, Cambridge MA, USA.ORCID 0000-0002-4388-4737
Nasim JamaliImaging Platform, Broad Institute of MIT and Harvard, Cambridge MA, USA.ORCID 0000-0003-1851-6585
Barbara Diaz-RohrerImaging Platform, Broad Institute of MIT and Harvard, Cambridge MA, USA.ORCID 0000-0002-4748-7077
Shatavisha DasguptaImaging Platform, Broad Institute of MIT and Harvard, Cambridge MA, USA.ORCID 0000-0003-1804-5015
Mario CruzImaging Platform, Broad Institute of MIT and Harvard, Cambridge MA, USA.ORCID 0000-0003-0362-1323
Erin WeisbartImaging Platform, Broad Institute of MIT and Harvard, Cambridge MA, USA.ORCID 0000-0002-6437-2458
Anne E CarpenterImaging Platform, Broad Institute of MIT and Harvard, Cambridge MA, USA.ORCID 0000-0003-1555-8261

Funding

Role of fibroblastic stromal cells and notch signaling in tissue inflammation in RA and SLEP01AI148102 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI Michael B. Brenner, Nir Hacohen · 2021 to 2026
$17.3M
Center for Open Bioimage AnalysisP41GM135019 · NIGMS · BROAD INSTITUTE, INC. · PI CARPENTER, ANNE E., CIMINI, BETH · 2020 to 2024
$6.9M
Extracting rich information from biological imagesR35GM122547 · NIGMS · BROAD INSTITUTE, INC. · PI Anne E. Carpenter · 2017 to 2026
$6.2M
NIAID NIH HHS P01 AI148102NIGMS NIH HHS P41 GM135019NIGMS NIH HHS R35 GM122547
6 · The paper itself

Abstract

We herein describe a postdoctoral training program designed to train biologists with microscopy experience in bioimage analysis. We detail the rationale behind the program, the various components of the training program, and outcomes in terms of works produced and the career effects on past participants. We analyze the results of an anonymous survey distributed to past and present participants, indicating overall high value of all 12 rated aspects of the program, but significant heterogeneity in which aspects were most important to each participant. Finally, we propose this model as a template for other programs which may want to train experts in professional skill sets, and discuss the important considerations when running such a program. We believe that such programs can have extremely positive impact for both the trainees themselves and the broader scientific community.

Identifiers

PMID38798545
PMCPMC11118354

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.