Evidence map›Paper›PMID 38798450›Full record

ArticlebioRxiv : the preprint server for biology2024

Exportin-1 functions as an adaptor for transcription factor-mediated docking of chromatin at the nuclear pore complex.

Tiffany Ge, Donna Garvey Brickner, Kara Zehr, D Jake VanBelzen, Wenzhu Zhang, Christopher Caffalette, Sara Ungerleider, Nikita Marcou, Brian Chait, Michael P Rout and 1 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Tiffany GeDepartment of Molecular Biosciences, Northwestern University, Evanston, IL.ORCID 0000-0001-8774-7980
Donna Garvey BricknerDepartment of Molecular Biosciences, Northwestern University, Evanston, IL.
Kara ZehrDepartment of Molecular Biosciences, Northwestern University, Evanston, IL.
D Jake VanBelzenDepartment of Molecular Biosciences, Northwestern University, Evanston, IL.ORCID 0000-0003-0949-3641
Wenzhu ZhangLaboratory of Mass Spectrometry and Gaseous Ion Chemistry, The Rockefeller University, New York, NY.ORCID 0009-0001-3154-871X
Christopher CaffaletteLaboratory of Cellular and Structural Biology, The Rockefeller University, New York, NY.ORCID 0000-0003-1299-6485
Sara UngerleiderDepartment of Molecular Biosciences, Northwestern University, Evanston, IL.
Nikita MarcouDepartment of Molecular Biosciences, Northwestern University, Evanston, IL.ORCID 0000-0003-0232-081X
Brian ChaitLaboratory of Mass Spectrometry and Gaseous Ion Chemistry, The Rockefeller University, New York, NY.ORCID 0000-0003-3524-557X
Michael P RoutLaboratory of Cellular and Structural Biology, The Rockefeller University, New York, NY.ORCID 0000-0003-2010-706X
Jason H BricknerDepartment of Molecular Biosciences, Northwestern University, Evanston, IL.ORCID 0000-0001-8019-3743

Funding

TR&D Project 4. The Imaging Stage: Multiscale Spatiotemporal Modeling of Macromolecular Systems in Cellular NeighborhoodsP41GM109824 · NIGMS · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2014 to 2023
$18.8M
CELLULAR &MOLECULAR BASIS OF DISEASE TRAINING PROGRAMT32GM008061 · NIGMS · NORTHWESTERN UNIVERSITY · PI CARTHEW, RICHARD W. · 1985 to 2022
$17.1M
Structure-Function Mapping of the Nuclear Pore Complex-RenewalR01GM112108 · NIGMS · ROCKEFELLER UNIVERSITY · PI JOHN D. AITCHISON, MICHAEL P ROUT · 2015 to 2026
$9.1M
The molecular mechanisms and functional significance of gene positioningR35GM136419 · NIGMS · NORTHWESTERN UNIVERSITY · PI BRICKNER, JASON HAYS · 2020 to 2024
$2.9M
Structure-function mapping of large cargo transport through the nuclear pore complexF32GM153164 · NIGMS · ROCKEFELLER UNIVERSITY · PI CAFFALETTE, CHRISTOPHER ALPERT · 2024 to 2025
$157k
NIGMS NIH HHS F32 GM153164NIGMS NIH HHS P41 GM109824NIGMS NIH HHS R01 GM112108NIGMS NIH HHS R35 GM136419NIGMS NIH HHS T32 GM008061
6 · The paper itself

Abstract

Nuclear pore proteins (Nups) in yeast, flies and mammals physically interact with hundreds or thousands of chromosomal sites, which impacts transcriptional regulation. In budding yeast, transcription factors mediate interaction of Nups with enhancers of highly active genes. To define the molecular basis of this mechanism, we exploited a separation-of-function mutation in the Gcn4 transcription factor that blocks its interaction with the nuclear pore complex (NPC) without altering its DNA binding or activation domains. SILAC mass spectrometry revealed that this mutation reduces the interaction of Gcn4 with the highly conserved nuclear export factor Crm1/Xpo1. Crm1 both interacts with the same sites as Nups genome-wide and is required for Nup2 to interact with the yeast genome.

Identifiers

PMID38798450
PMCPMC11118273

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.