Evidence map›Paper›PMID 38797430›Full record

ArticleJournal of molecular biology2024

Spatiotemporal Control of Inflammatory Lytic Cell Death Through Optogenetic Induction of RIPK3 Oligomerization.

Teak-Jung Oh, Vishnu Krishnamurthy, Jeong Won Han, Junyao Zhu, Zayn Beg, Amna Mehfooz, Bryan Gworek, David J Shapiro, Kai Zhang

Abstract read
In one paragraph

Article in Journal of molecular biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Review
  2. Article
  3. Chemical reviews · 2026
    Review
  4. Review
  5. Article
  6. Article
  7. Optogenetic engineering for precision cancer immunotherapy.Trends in pharmacological sciences · 2025
    Review
  8. Article
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Teak-Jung OhDepartment of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
Vishnu KrishnamurthyHigh-throughput Screening Center, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
Jeong Won HanDepartment of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
Junyao ZhuDepartment of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
Zayn BegDepartment of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
Amna MehfoozDepartment of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
Bryan GworekCenter for Biophysics and Quantitative Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
David J ShapiroDepartment of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
Kai ZhangDepartment of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA; Center for Biophysics and Quantitative Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA; Cancer Center at Illinois, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA; NSF Science and Technology Center for Quantitative Cell Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA. Electronic address: kaizkaiz@illinois.edu.

Funding

Mechanism of Gp1 mGluR-dependent translation and plasticityR01MH124827 · NIMH · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI TSAI, NIEN-PEI, ZHANG, KAI · 2021 to 2025
$2.3M
A Pathway for Necrotic Cell DeathR01CA265333 · NCI · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI SHAPIRO, DAVID J · 2022 to 2025
$1.8M
Precise regulation of native transcription factor at the single-cell levelR01GM132438 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI ZHANG, KAI · 2019 to 2022
$1.4M
NCI NIH HHS R01 CA265333NIGMS NIH HHS R01 GM132438NIMH NIH HHS R01 MH124827
6 · The paper itself

Abstract

Necroptosis is a programmed lytic cell death involving active cytokine production and plasma membrane rupture through distinct signaling cascades. However, it remains challenging to delineate this inflammatory cell death pathway at specific signaling nodes with spatiotemporal accuracy. To address this challenge, we developed an optogenetic system, termed Light-activatable Receptor-Interacting Protein Kinase 3 or La-RIPK3, to enable ligand-free, optical induction of RIPK3 oligomerization. La-RIPK3 activation dissects RIPK3-centric lytic cell death through the induction of RIPK3-containing necrosome, which mediates cytokine production and plasma membrane rupture. Bulk RNA-Seq analysis reveals that RIPK3 oligomerization results in partially overlapped gene expression compared to pharmacological induction of necroptosis. Additionally, La-RIPK3 activates separated groups of genes regulated by RIPK3 kinase-dependent and -independent processes. Using patterned light stimulation delivered by a spatial light modulator, we demonstrate precise spatiotemporal control of necroptosis in La-RIPK3-transduced HT-29 cells. Optogenetic control of proinflammatory lytic cell death could lead to the development of innovative experimental strategies to finetune the immune landscape for disease intervention.

Indexed as

NecroptosisOptogeneticsReceptor-Interacting Protein Serine-Threonine KinasesCell DeathHT29 CellsHumansInflammationProtein MultimerizationSignal TransductionReceptor-Interacting Protein Serine-Threonine KinasesRIPK3 protein, humanlytic cell deathnecroptosisoptogeneticsRIPK3RNA-seq

Identifiers

PMID38797430
PMCPMC11234905

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.