Evidence map›Paper›PMID 38796698›Full record

ArticleBiophysical journal2024

Photoinhibition of the hERG potassium channel PAS domain by ultraviolet light speeds channel closing.

Sara J Codding, Matthew C Trudeau

Abstract read
In one paragraph

Article in Biophysical journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
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  5. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

2 authors.

Sara J CoddingDepartment of Physiology, University of Maryland School of Medicine, Baltimore, Maryland.
Matthew C TrudeauDepartment of Physiology, University of Maryland School of Medicine, Baltimore, Maryland. Electronic address: mtrudeau@som.umaryland.edu.

Funding

Allosteric Regulation of KCNH ChannelsR01NS081320 · NINDS · UNIVERSITY OF WISCONSIN-MADISON · PI ROBERTSON, GAIL A · 2012 to 2022
$3.4M
Conformational Dynamics of hERG Potassium ChannelsR01GM130701 · NIGMS · UNIVERSITY OF MARYLAND BALTIMORE · PI TRUDEAU, MATTHEW C · 2019 to 2022
$1.3M
Regulatory and Functional Mechanisms in hERG Ion ChannelsR01GM127523 · NIGMS · UNIVERSITY OF MARYLAND BALTIMORE · PI TRUDEAU, MATTHEW C · 2019 to 2022
$1.1M
Visualizing the divergent conformational dynamics of KCNH channelsK99GM144684 · NIGMS · UNIVERSITY OF MARYLAND BALTIMORE · PI CODDING, SARA J. · 2022 to 2023
$223k
NIGMS NIH HHS K99 GM144684NIGMS NIH HHS R01 GM127523NIGMS NIH HHS R01 GM130701NINDS NIH HHS R01 NS081320
6 · The paper itself

Abstract

hERG potassium channels are critical for cardiac excitability. hERG channels have a Per-Arnt-Sim (PAS) domain at their N-terminus, and here, we examined the mechanism for PAS domain regulation of channel opening and closing (gating). We used TAG codon suppression to incorporate the noncanonical amino acid 4-benzoyl-L-phenylalanine (BZF), which is capable of forming covalent cross-links after photoactivation by ultraviolet (UV) light, at three locations (G47, F48, and E50) in the PAS domain. We found that hERG-G47BZF channels had faster closing (deactivation) when irradiated in the open state (at 0 mV) but showed no measurable changes when irradiated in the closed state (at -100 mV). hERG-F48BZF channels had slower activation, faster deactivation, and a marked rightward shift in the voltage dependence of activation when irradiated in the open (at 0 mV) or closed (at -100 mV) state. hERG-E50BZF channels had no measurable changes when irradiated in the open state (at 0 mV) but had slower activation, faster deactivation, and a rightward shift in the voltage dependence of activation when irradiated in the closed state (at -100mV), indicating that hERG-E50BZF had a state-dependent difference in UV photoactivation, which we interpret to mean that PAS underwent molecular motions between the open and closed states. Moreover, we propose that UV-dependent biophysical changes in hERG-G47BZF, F48BZF, and E50BZF were the direct result of photochemical cross-linking that reduced dynamic motions in the PAS domain and broadly stabilized the closed state relative to the open state of the channel.

Indexed as

Ion Channel GatingProtein DomainsUltraviolet RaysBenzophenonesERG1 Potassium ChannelHEK293 CellsHumansPhenylalaninePhotochemical Processes4-benzoylphenylalanineBenzophenonesERG1 Potassium ChannelPhenylalanine

Identifiers

PMID38796698
PMCPMC11365103

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.