Evidence map›Paper›PMID 38795706›Full record

ArticleMolecular cell2024

Heterochromatic 3D genome organization is directed by HP1a- and H3K9-dependent and independent mechanisms.

Alexis V Stutzman, Christina A Hill, Robin L Armstrong, Riya Gohil, Robert J Duronio, Jill M Dowen, Daniel J McKay

Abstract read
In one paragraph

Article in Molecular cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
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  5. Article
  6. Article
  7. Polymorphic 3D genome architecture mediated by transposable elements.bioRxiv : the preprint server for biology · 2026
    Article
  8. Article
  9. Article
  10. The Biological Function of Genome Organization.International journal of molecular sciences · 2025
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Alexis V StutzmanCurriculum in Genetics & Molecular Biology, University of North Carolina, Chapel Hill, NC 27599, USA.
Christina A HillIntegrative Program for Biological and Genome Sciences, University of North Carolina, Chapel Hill, NC 27599, USA.
Robin L ArmstrongCurriculum in Genetics & Molecular Biology, University of North Carolina, Chapel Hill, NC 27599, USA.
Riya GohilCurriculum in Genetics & Molecular Biology, University of North Carolina, Chapel Hill, NC 27599, USA.
Robert J DuronioIntegrative Program for Biological and Genome Sciences, University of North Carolina, Chapel Hill, NC 27599, USA; Department of Biology, University of North Carolina, Chapel Hill, NC 27599, USA; Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC 27599, USA; Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA. Electronic address: duronio@med.unc.edu.
Jill M DowenIntegrative Program for Biological and Genome Sciences, University of North Carolina, Chapel Hill, NC 27599, USA; Department of Biology, University of North Carolina, Chapel Hill, NC 27599, USA; Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, NC 27599, USA; Department of Biochemistry & Biophysics, University of North Carolina, Chapel Hill, NC 27599, USA. Electronic address: jilldowen@unc.edu.
Daniel J McKayIntegrative Program for Biological and Genome Sciences, University of North Carolina, Chapel Hill, NC 27599, USA; Department of Biology, University of North Carolina, Chapel Hill, NC 27599, USA; Department of Genetics, University of North Carolina, Chapel Hill, NC 27599, USA. Electronic address: dmckay1@email.unc.edu.

Funding

NRSA IN GENETICST32GM007092 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SEKELSKY, JEFF J. · 1985 to 2019
$5.9M
NRSA in GeneticsT32GM135128 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Daniel J McKay, JEFF J. SEKELSKY · 2020 to 2026
$5.1M
Genetic and epigenetic mechanisms of developmental gene regulationR35GM128851 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Daniel J McKay · 2018 to 2026
$3.9M
Epigenetic Control of the Cell Cycle During Animal DevelopmentR35GM145258 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Robert J Duronio · 2022 to 2026
$2.3M
Regulation of chromosome structure and gene expression by architectural proteinsR35GM124764 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DOWEN, JILL · 2017 to 2021
$2.0M
The role of genome folding in regulating gene expression and chromatin stateR35GM152103 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Jill Dowen · 2024 to 2026
$1.3M
NIGMS NIH HHS R35 GM124764NIGMS NIH HHS R35 GM128851NIGMS NIH HHS R35 GM145258NIGMS NIH HHS R35 GM152103NIGMS NIH HHS T32 GM007092NIGMS NIH HHS T32 GM135128
6 · The paper itself

Abstract

Whether and how histone post-translational modifications and the proteins that bind them drive 3D genome organization remains unanswered. Here, we evaluate the contribution of H3K9-methylated constitutive heterochromatin to 3D genome organization in Drosophila tissues. We find that the predominant organizational feature of wild-type tissues is the segregation of euchromatic chromosome arms from heterochromatic pericentromeres. Reciprocal perturbation of HP1a⋅H3K9me binding, using a point mutation in the HP1a chromodomain or replacement of the replication-dependent histone H3 with H3

Indexed as

Chromobox Protein Homolog 5Chromosomal Proteins, Non-HistoneDrosophila melanogasterDrosophila ProteinsHeterochromatinHistonesAnimalsCentromereChromosome SegregationEuchromatinGenome, InsectMethylationProtein BindingProtein Processing, Post-TranslationalChromobox Protein Homolog 5Chromosomal Proteins, Non-HistoneDrosophila ProteinsEuchromatinHeterochromatinHistones3D genome organizationheterochromatinhistone H3K9HP1

Identifiers

PMID38795706
PMCPMC11185254

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.