Evidence map›Paper›PMID 38794455›Full record

ArticlePlants (Basel, Switzerland)2024

Bulk Segregant Analysis Sequencing and RNA-Seq Analyses Reveal Candidate Genes Associated with Sepal Color Phenotype of Eggplant (

Benqi Wang, Xia Chen, Shuping Huang, Jie Tan, Hongyuan Zhang, Junliang Wang, Rong Chen, Min Zhang

Abstract read
In one paragraph

Article in Plants (Basel, Switzerland), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Benqi WangWuhan Vegetable Research Institute, Wuhan Academy of Agricultural Sciences, Wuhan 430065, China.
Xia ChenWuhan Vegetable Research Institute, Wuhan Academy of Agricultural Sciences, Wuhan 430065, China.
Shuping HuangWuhan Vegetable Research Institute, Wuhan Academy of Agricultural Sciences, Wuhan 430065, China.
Jie TanWuhan Vegetable Research Institute, Wuhan Academy of Agricultural Sciences, Wuhan 430065, China.
Hongyuan ZhangWuhan Vegetable Research Institute, Wuhan Academy of Agricultural Sciences, Wuhan 430065, China.
Junliang WangWuhan Vegetable Research Institute, Wuhan Academy of Agricultural Sciences, Wuhan 430065, China.
Rong ChenWuhan Vegetable Research Institute, Wuhan Academy of Agricultural Sciences, Wuhan 430065, China.
Min ZhangWuhan Vegetable Research Institute, Wuhan Academy of Agricultural Sciences, Wuhan 430065, China.

Funding

development project of Hubei Province Department of Science and Technology 2022BBA0060Hubei Provincial Funding Program to Support High-Quality Development of the Seed Industry HBZY2023B004Wuhan Academy of Agricultural Sciences Innovation Talent Project CX201719Wuhan Major Project of Key Technologies in Biological Breeding and New Variety Cultivation 2022021302024852
6 · The paper itself

Abstract

Eggplant is a highly significant vegetable crop and extensively cultivated worldwide. Sepal color is considered one of the major commercial traits of eggplant. Eggplant sepals develop from petals, and sepals have the ability to change color by accumulating anthocyanins, but whether the eggplants in sepal and their biosynthetic pathways are the same as those in petals is not known. To date, little is known about the underlying mechanisms of sepal color formation. In this study, we performed bulked segregant analysis and transcriptome sequencing using eggplant sepals and obtained 1,452,898 SNPs and 182,543 InDel markers, respectively, as well as 123.65 Gb of clean data using transcriptome sequencing. Through marker screening, the genes regulating eggplant sepals were localized to an interval of 2.6 cM on chromosome 10 by bulked segregant analysis sequencing and transcriptome sequencing and co-analysis, combined with screening of molecular markers by capillary electrophoresis. Eight possible candidate genes were then screened to further interpret the regulatory incentives for the eggplant sepal color.

Indexed as

BSA sequencecandidate geneeggplantsepal colortranscriptome analysis

Identifiers

PMID38794455
PMCPMC11124939

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.