Evidence map›Paper›PMID 38791234›Full record

ArticleInternational journal of molecular sciences2024

Genome-Wide Profile of Mutations Induced by Carbon Ion Beam Irradiation of Dehulled Rice Seeds.

Ying Ling, Yuming Zhang, Ming Huang, Tao Guo, Guili Yang

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Ying LingNational Engineering Research Center of Plant Space Breeding, South China Agricultural University, Guangzhou 510642, China.
Yuming ZhangNational Engineering Research Center of Plant Space Breeding, South China Agricultural University, Guangzhou 510642, China.
Ming HuangNational Engineering Research Center of Plant Space Breeding, South China Agricultural University, Guangzhou 510642, China.ORCID 0000-0002-6097-7038
Tao GuoNational Engineering Research Center of Plant Space Breeding, South China Agricultural University, Guangzhou 510642, China.
Guili YangNational Engineering Research Center of Plant Space Breeding, South China Agricultural University, Guangzhou 510642, China.

Funding

Heyuan Branch, Guangdong Laboratory for Lingnan Modern Agriculture Project DT20220002the "Unveiling and Leading" Project of Hainan Yazhou Bay Seed Laboratory B23YQ1512, B23CQ15CP
6 · The paper itself

Abstract

As a physical mutagen, carbon ion beam (CIB) irradiation can induce high-frequency mutation, which is user-friendly and environment-friendly in plant breeding. In this study, we resequenced eight mutant lines which were screened out from the progeny of the CIB-irradiated dehulled rice seeds. Among these mutants, CIB induced 135,535 variations, which include single base substitutions (SBSs), and small insertion and deletion (InDels). SBSs are the most abundant mutation, and account for 88% of all variations. Single base conversion is the main type of SBS, and the average ratio of transition and transversion is 1.29, and more than half of the InDels are short-segmented mutation (1-2 bp). A total of 69.2% of the SBSs and InDels induced by CIBs occurred in intergenic regions on the genome. Surprisingly, the average mutation frequency in our study is 9.8 × 10

Indexed as

Genome, PlantMutationOryzaSeedsCarbonHeavy IonsINDEL MutationCarboncarbon ion beam (CIB) irradiationInDelsOryza sativa L.resequencingsingle base substitution (SBS)

Identifiers

PMID38791234
PMCPMC11121050

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.