Evidence map›Paper›PMID 38790249›Full record

ArticleGenes2024

Transposable Element Expression Profiles in Premalignant Pigment Cell Lesions and Melanoma of Xiphophorus.

Luca Münch, Frederik Helmprobst, Jean-Nicolas Volff, Domitille Chalopin, Manfred Schartl, Susanne Kneitz

Abstract read
In one paragraph

Article in Genes, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Luca MünchNeurology Asklepios Klinik Barmbek, Rübenkamp 220, 22307 Hamburg, Germany.
Frederik HelmprobstInstitute of Neuropathology, Philipps-University Marburg, 35037 Marburg, Germany.
Jean-Nicolas VolffInstitut de Génomique Fonctionnelle de Lyon (IGFL), 69007 Lyon, France.
Domitille ChalopinUniversity of Bordeaux, CNRS, IBGC, UMR 5095, 33000 Bordeaux, France.ORCID 0000-0003-0588-9630
Manfred SchartlThe Xiphophorus Genetic Stock Center, Department of Chemistry and Biochemistry, Texas State University, San Marcos, TX 786666, USA.ORCID 0000-0001-9882-5948
Susanne KneitzBiochemistry and Cell Biology, Biocenter, University of Würzburg, Am Hubland, 97074 Würzburg, Germany.ORCID 0000-0001-9425-3698

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transposable elements (TEs) are characterized by their ability to change their genomic position. Through insertion or recombination leading to deletions and other chromosomal aberrations, they can cause genetic instability. The extent to which they thereby exert regulatory influence on cellular functions is unclear. To better characterize TEs in processes such as carcinogenesis, we used the well-established Xiphophorus melanoma model. By transcriptome sequencing, we show that an increasing total number in transposons correlates with progression of malignancy in melanoma samples from Xiphophorus interspecific hybrids. Further, by comparing the presence of TEs in the parental genomes of

Indexed as

CyprinodontiformesDNA Transposable ElementsMelanomaAnimalsGene Expression Regulation, NeoplasticPrecancerous ConditionsTranscriptomeDNA Transposable Elementsfish modelmelanomatransposable elements

Identifiers

PMID38790249
PMCPMC11121471

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.