Evidence map›Paper›PMID 38790178›Full record

ArticleGenes2024

A Bidirectional Non-Coding RNA Promoter Mediates Long-Range Gene Expression Regulation.

Carlos Alberto Peralta-Alvarez, Hober Nelson Núñez-Martínez, Ángel Josué Cerecedo-Castillo, Augusto César Poot-Hernández, Gustavo Tapia-Urzúa, Sylvia Garza-Manero, Georgina Guerrero, Félix Recillas-Targa

Abstract read
In one paragraph

Article in Genes, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Carlos Alberto Peralta-AlvarezInstituto de Fisiología Celular, Departaménto de Genética Molecular, Universidad Nacional Autónoma de México, Mexico City 04510, Mexico.ORCID 0000-0001-6103-5133
Hober Nelson Núñez-MartínezInstituto de Fisiología Celular, Departaménto de Genética Molecular, Universidad Nacional Autónoma de México, Mexico City 04510, Mexico.ORCID 0000-0003-1726-2499
Ángel Josué Cerecedo-CastilloInstituto de Fisiología Celular, Departaménto de Genética Molecular, Universidad Nacional Autónoma de México, Mexico City 04510, Mexico.ORCID 0009-0005-0263-5215
Augusto César Poot-HernándezInstituto de Fisiología Celular, Unidad de Bioinformática y Manejo de la Información, Universidad Nacional Autónoma de México, Mexico City 04510, Mexico.ORCID 0000-0003-4565-7594
Gustavo Tapia-UrzúaInstituto de Fisiología Celular, Departaménto de Genética Molecular, Universidad Nacional Autónoma de México, Mexico City 04510, Mexico.
Sylvia Garza-ManeroInstituto de Fisiología Celular, Departaménto de Genética Molecular, Universidad Nacional Autónoma de México, Mexico City 04510, Mexico.ORCID 0000-0002-3508-5150
Georgina GuerreroInstituto de Fisiología Celular, Departaménto de Genética Molecular, Universidad Nacional Autónoma de México, Mexico City 04510, Mexico.ORCID 0000-0003-2933-1498
Félix Recillas-TargaInstituto de Fisiología Celular, Departaménto de Genética Molecular, Universidad Nacional Autónoma de México, Mexico City 04510, Mexico.

Funding

Consejo Nacional de Humanidades, Ciencias y Tecnologías Doctorate fellowship 413950Consejo Nacional de Humanidades, Ciencias y Tecnologías Investigación en Ciencia Basica 2017-2018 (A1-S-11844)Consejo Nacional de Humanidades, Ciencias y Tecnologías umanidades, Ciencias y Tecnologías [Investigación en Ciencia Basica 2017-2018 (A1-S-11844) and Fronteras de la Ciencia 2015 (Proyecto 290)DGAPA-PAPIIT IN203620 and IN206823Fundación Miguel Alemán A.C. 2018
6 · The paper itself

Abstract

Recent evidence suggests that human gene promoters display gene expression regulatory mechanisms beyond the typical single gene local transcription modulation. In mammalian genomes, genes with an associated bidirectional promoter are abundant; bidirectional promoter architecture serves as a regulatory hub for a gene pair expression. However, it has been suggested that its contribution to transcriptional regulation might exceed local transcription initiation modulation. Despite their abundance, the functional consequences of bidirectional promoter architecture remain largely unexplored. This work studies the long-range gene expression regulatory role of a long non-coding RNA gene promoter using chromosome conformation capture methods. We found that this particular bidirectional promoter contributes to distal gene expression regulation in a target-specific manner by establishing promoter-promoter interactions. In particular, we validated that the promoter-promoter interactions of this regulatory element with the promoter of distal gene

Indexed as

Gene Expression RegulationPromoter Regions, GeneticRNA, Long NoncodingEnhancer Elements, GeneticHumansTranscription, GeneticRNA, Long Noncodingbidirectional promotercis-regulatory elementgene structurelong non-coding RNAtranscription regulation

Identifiers

PMID38790178
PMCPMC11120797

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.