Evidence map›Paper›PMID 38789996›Full record

ArticleMicrobial cell factories2024

Intracellular removal of acetyl, feruloyl and p-coumaroyl decorations on arabinoxylo-oligosaccharides imported from lignocellulosic biomass degradation by Ruminiclostridium cellulolyticum.

Nian Liu, Elise Odinot, Hélène David, Nicolas Vita, Felipe Mejia Otalvaro, Goetz Parsiegla, Yann Denis, Craig Faulds, Henri-Pierre Fierobe, Stéphanie Perret

Abstract read
In one paragraph

Article in Microbial cell factories, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Nian LiuAix-Marseille Université, CNRS, LCB-UMR7283, Marseille, France.
Elise OdinotOléoInnov, 19 rue du Musée, Marseille, 13001, France.
Hélène DavidAix-Marseille Université, CNRS, LCB-UMR7283, Marseille, France.
Nicolas VitaAix-Marseille Université, CNRS, LCB-UMR7283, Marseille, France.
Felipe Mejia OtalvaroTechnical University of Denmark, The Novo Nordisk Foundation Center for Biosustainability, Konges Lyngby, 2800, Denmark.
Goetz ParsieglaAix-Marseille Université, CNRS, BIP-UMR7281, Marseille, France.
Yann DenisAix-Marseille Université, CNRS, IMM, Marseille, France.
Craig FauldsBiodiversité et Biotechnologie Fongiques, INRAE, Aix Marseille University, Marseille, UMR1163, 13009, France.
Henri-Pierre FierobeAix-Marseille Université, CNRS, LCB-UMR7283, Marseille, France.
Stéphanie PerretAix-Marseille Université, CNRS, LCB-UMR7283, Marseille, France. perret@imm.cnrs.fr.

Funding

Agence Nationale de la Recherche ANR-21-CE43-0018China Scholarship Council 201806950015European Research Area ERA CoBioTEch ANR-21-COBI-0001
6 · The paper itself

Abstract

backgroundXylans are polysaccharides that are naturally abundant in agricultural by-products, such as cereal brans and straws. Microbial degradation of arabinoxylan is facilitated by extracellular esterases that remove acetyl, feruloyl, and p-coumaroyl decorations. The bacterium Ruminiclostridium cellulolyticum possesses the Xua (xylan utilization associated) system, which is responsible for importing and intracellularly degrading arabinoxylodextrins. This system includes an arabinoxylodextrins importer, four intracellular glycosyl hydrolases, and two intracellular esterases, XuaH and XuaJ which are encoded at the end of the gene cluster.

resultsGenetic studies demonstrate that the genes xuaH and xuaJ are part of the xua operon, which covers xuaABCDD'EFGHIJ. This operon forms a functional unit regulated by the two-component system XuaSR. The esterases encoded at the end of the cluster have been further characterized: XuaJ is an acetyl esterase active on model substrates, while XuaH is a xylan feruloyl- and p-coumaryl-esterase. This latter is active on oligosaccharides derived from wheat bran and wheat straw. Modelling studies indicate that XuaH has the potential to interact with arabinoxylobiose acylated with mono- or diferulate. The intracellular esterases XuaH and XuaJ are believed to allow the cell to fully utilize the complex acylated arabinoxylo-dextrins imported into the cytoplasm during growth on wheat bran or straw.

conclusionsThis study reports for the first time that a cytosolic feruloyl esterase is part of an intracellular arabinoxylo-dextrin import and degradation system, completing its cytosolic enzymatic arsenal. This system represents a new pathway for processing highly-decorated arabinoxylo-dextrins, which could provide a competitive advantage to the cell and may have interesting biotechnological applications.

Indexed as

LigninXylansAcetylesteraseBacterial ProteinsBiomassCarboxylic Ester HydrolasesCoumaric AcidsEubacterialesMultigene FamilyOligosaccharidesOperonAcetylesterasearabinoxylanBacterial ProteinsCarboxylic Ester HydrolasesCoumaric Acidsferuloyl esteraseLigninlignocelluloseOligosaccharidesXylansArabinoxylan degradationArabinoxylo-oligosaccharideFeruloyl esterasep-coumaroyl esterase

Identifiers

PMID38789996
PMCPMC11127375

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.