Evidence map›Paper›PMID 38789717›Full record

ArticleScientific reports2024

Comparative analysis, diversification, and functional validation of plant nucleotide-binding site domain genes.

Athar Hussain, Aqsa Anwer Khan, Muhammad Qasim Aslam, Aquib Nazar, Nadir Zaman, Ayesha Amin, Muhammad Arslan Mahmood, M Shahid Mukhtar, Hafiz Ubaid Ur Rahman, Muhammed Farooq and 3 more

Abstract readComparative Study
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Athar Hussain *National Institute for Biotechnology and Genetic Engineering, College of Pakistan Institute of Engineering and Applied Sciences (PIEAS), Faisalabad, 38000, Pakistan. atharmutahari@gmail.com.
Aqsa Anwer KhanDepartment of Life Science, University of Management and Technology (UMT), Lahore, 54000, Pakistan.
Muhammad Qasim Aslam *National Institute for Biotechnology and Genetic Engineering, College of Pakistan Institute of Engineering and Applied Sciences (PIEAS), Faisalabad, 38000, Pakistan.
Aquib NazarDepartment of Life Science, University of Management and Technology (UMT), Lahore, 54000, Pakistan.
Nadir ZamanDepartment of Life Science, University of Management and Technology (UMT), Lahore, 54000, Pakistan.
Ayesha AminDepartment of Biological Sciences, Superior University, Lahore, 54000, Pakistan.
Muhammad Arslan MahmoodPlant Science Division, Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia.
M Shahid MukhtarBiosystems Research Complex, Department of Genetics & Biochemistry, Clemson University, Clemson, SC, 29634, USA.
Hafiz Ubaid Ur RahmanSchool of Food and Agricultural Sciences (SFAS), University of Management and Technology (UMT), Lahore, 54000, Pakistan.
Muhammed FarooqNational Institute for Biotechnology and Genetic Engineering, College of Pakistan Institute of Engineering and Applied Sciences (PIEAS), Faisalabad, 38000, Pakistan.
Muhammed SaeedRheinland-Pfälzische Technische Universität Kaiserslautern-Landau Abteilung Phytopathologie, Paul-Ehrlich-Straße 22, 67653, Kaiserslautern, Germany.
Imran AminNational Institute for Biotechnology and Genetic Engineering, College of Pakistan Institute of Engineering and Applied Sciences (PIEAS), Faisalabad, 38000, Pakistan. imranamin1@yahoo.com.
Shahid MansoorNational Institute for Biotechnology and Genetic Engineering, College of Pakistan Institute of Engineering and Applied Sciences (PIEAS), Faisalabad, 38000, Pakistan. shahidmansoor7@gmail.com.

Funding

International Foundation for Science I-1-C-6501-1
6 · The paper itself

Abstract

Nucleotide-binding site (NBS) domain genes are one of the superfamily of resistance genes involved in plant responses to pathogens. The current study identified 12,820 NBS-domain-containing genes across 34 species covering from mosses to monocots and dicots. These identified genes are classified into 168 classes with several novel domain architecture patterns encompassing significant diversity among plant species. Several classical (NBS, NBS-LRR, TIR-NBS, TIR-NBS-LRR, etc.) and species-specific structural patterns (TIR-NBS-TIR-Cupin_1-Cupin_1, TIR-NBS-Prenyltransf, Sugar_tr-NBS etc.) were discovered. We observed 603 orthogroups (OGs) with some core (most common orthogroups; OG

Indexed as

Plant ProteinsBinding SitesDisease ResistanceGene Expression ProfilingGene Expression Regulation, PlantGenes, PlantNucleotidesPhylogenyPlant DiseasesPlantsProtein DomainsNucleotidesPlant ProteinsClassificationDiversityEvolutionExpressionGenome-wideLand plantsNLRVIGS

Identifiers

PMID38789717
PMCPMC11126693

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.