Evidence map›Paper›PMID 38789411›Full record

ArticleNature communications2024

HDAC activity is dispensable for repression of cell-cycle genes by DREAM and E2F:RB complexes.

Alison K Barrett, Manisha R Shingare, Andreas Rechtsteiner, Kelsie M Rodriguez, Quynh N Le, Tilini U Wijeratne, Corbin E Mitchell, Miles W Membreno, Seth M Rubin, Gerd A Müller

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. HDAC7 influences ER-⍺ transcription via NCoR-HDAC3 dissociation.Biochimica et biophysica acta. Proteins and proteomics · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Review
  13. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Alison K BarrettDepartment of Chemistry and Biochemistry, University of California, Santa Cruz, CA, USA.ORCID http://orcid.org/0009-0007-4570-5265
Manisha R ShingareDepartment of Chemistry and Biochemistry, University of California, Santa Cruz, CA, USA.ORCID http://orcid.org/0009-0005-1103-0410
Andreas RechtsteinerDepartment of Molecular, Cell, and Developmental Biology, University of California, Santa Cruz, CA, USA.
Kelsie M RodriguezDepartment of Chemistry and Biochemistry, University of California, Santa Cruz, CA, USA.
Quynh N LeDepartment of Chemistry and Biochemistry, University of California, Santa Cruz, CA, USA.ORCID http://orcid.org/0009-0000-5215-8254
Tilini U WijeratneDepartment of Chemistry and Biochemistry, University of California, Santa Cruz, CA, USA.ORCID http://orcid.org/0000-0003-4534-036X
Corbin E MitchellDepartment of Chemistry and Biochemistry, University of California, Santa Cruz, CA, USA.
Miles W MembrenoDepartment of Chemistry and Biochemistry, University of California, Santa Cruz, CA, USA.
Seth M RubinDepartment of Chemistry and Biochemistry, University of California, Santa Cruz, CA, USA. srubin@ucsc.edu.ORCID http://orcid.org/0000-0002-1670-4147
Gerd A MüllerDepartment of Chemistry and Biochemistry, University of California, Santa Cruz, CA, USA. gemuelle@ucsc.edu.ORCID http://orcid.org/0000-0002-4967-2487

Funding

The MARC Program at UCSCT34GM140956 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI RUBIN, SETH MICHAEL · 2021 to 2025
$4.2M
IRACDA at UCSC and CSUMBK12GM139185 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI FORSBERG, CAMILLA, HINCK, LINDSAY E · 2020 to 2024
$4.1M
Molecular Mechanisms of Cell Cycle Dependent Gene ExpressionR35GM145255 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI Seth Michael Rubin · 2022 to 2026
$3.0M
Structural Mechanisms Controlling Cell-Cycle Gene ExpressionR01GM124148 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI RUBIN, SETH MICHAEL · 2018 to 2021
$1.5M
CytoFLEX LX Cell AnalyzerS10OD030423 · OD · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI FORSBERG, CAMILLA · 2021 to 2021
$297k
Cell-cycle dependent gene transcription through activation of B-MybF31CA254090 · NCI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI WIJERATNE, TILINI · 2021 to 2022
$77k
NCI NIH HHS F31 CA254090NIGMS NIH HHS K12 GM139185NIGMS NIH HHS R01 GM124148NIGMS NIH HHS R35 GM145255NIGMS NIH HHS T34 GM140956NIH HHS S10 OD030423Tobacco-Related Disease Research Program (TRDRP) 27DT-0005C
6 · The paper itself

Abstract

Histone deacetylases (HDACs) play a crucial role in transcriptional regulation and are implicated in various diseases, including cancer. They are involved in histone tail deacetylation and canonically linked to transcriptional repression. Previous studies suggested that HDAC recruitment to cell-cycle gene promoters via the retinoblastoma (RB) protein or the DREAM complex through SIN3B is essential for G1/S and G2/M gene repression during cell-cycle arrest and exit. Here we investigate the interplay among DREAM, RB, SIN3 proteins, and HDACs in the context of cell-cycle gene repression. Knockout of SIN3B does not globally derepress cell-cycle genes in non-proliferating HCT116 and C2C12 cells. Loss of SIN3A/B moderately upregulates several cell-cycle genes in HCT116 cells but does so independently of DREAM/RB. HDAC inhibition does not induce general upregulation of RB/DREAM target genes in arrested transformed or non-transformed cells. Our findings suggest that E2F:RB and DREAM complexes can repress cell-cycle genes without relying on HDAC activity.

Indexed as

E2F Transcription FactorsHistone DeacetylasesRepressor ProteinsRetinoblastoma ProteinAnimalsCell CycleGene Expression RegulationGenes, cdcHCT116 CellsHumansKv Channel-Interacting ProteinsMicePromoter Regions, GeneticSin3 Histone Deacetylase and Corepressor ComplexE2F Transcription FactorsHistone DeacetylasesKCNIP3 protein, humanKv Channel-Interacting ProteinsRepressor ProteinsRetinoblastoma ProteinSIN3A transcription factorSIN3B protein, humanSin3 Histone Deacetylase and Corepressor Complex

Identifiers

PMID38789411
PMCPMC11126580

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.