Evidence map›Paper›PMID 38788333›Full record

ArticleDatabase : the journal of biological databases and curation2024

MSGD: a manually curated database of genomic, transcriptomic, proteomic and drug information for multiple sclerosis.

Tao Wu, Yaopan Hou, Guanghao Xin, Jingyan Niu, Shanshan Peng, Fanfan Xu, Ying Li, Yuling Chen, Yifangfei Yu, Huixue Zhang and 5 more

Abstract read
In one paragraph

Article in Database : the journal of biological databases and curation, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Tao WuDepartment of Neurology, Xuanwu Hospital, Capital Medical University, No.45 Changchun Street, Xicheng District, Beijing 100053, China.
Yaopan HouCollege of Bioinformatics Science and Technology, Harbin Medical University, Baojian Road, Nangang District, Harbin, Heilongjiang 150081, China.
Guanghao XinDepartment of Neurology, The Second Affiliated Hospital, Harbin Medical University, Baojian Road, Nangang District, Harbin, Heilongjiang 150081, China.
Jingyan NiuDepartment of Neurology, The Second Affiliated Hospital, Harbin Medical University, Baojian Road, Nangang District, Harbin, Heilongjiang 150081, China.
Shanshan PengDepartment of Neurology, The Second Affiliated Hospital, Harbin Medical University, Baojian Road, Nangang District, Harbin, Heilongjiang 150081, China.
Fanfan XuDepartment of Neurology, The Second Affiliated Hospital, Harbin Medical University, Baojian Road, Nangang District, Harbin, Heilongjiang 150081, China.
Ying LiDepartment of Neurology, The Second Affiliated Hospital, Harbin Medical University, Baojian Road, Nangang District, Harbin, Heilongjiang 150081, China.
Yuling ChenCollege of Bioinformatics Science and Technology, Harbin Medical University, Baojian Road, Nangang District, Harbin, Heilongjiang 150081, China.
Yifangfei YuCollege of Bioinformatics Science and Technology, Harbin Medical University, Baojian Road, Nangang District, Harbin, Heilongjiang 150081, China.
Huixue ZhangDepartment of Neurology, The Second Affiliated Hospital, Harbin Medical University, Baojian Road, Nangang District, Harbin, Heilongjiang 150081, China.
Xiaotong KongDepartment of Neurology, The Second Affiliated Hospital, Harbin Medical University, Baojian Road, Nangang District, Harbin, Heilongjiang 150081, China.
Yuze CaoDepartment of Neurology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, No.1 Shuaifuyuan, Dongcheng District, Beijing 100730, China.
Shangwei NingCollege of Bioinformatics Science and Technology, Harbin Medical University, Baojian Road, Nangang District, Harbin, Heilongjiang 150081, China.ORCID 0000-0003-4079-8945
Lihua WangDepartment of Neurology, The Second Affiliated Hospital, Harbin Medical University, Baojian Road, Nangang District, Harbin, Heilongjiang 150081, China.
Junwei HaoDepartment of Neurology, Xuanwu Hospital, Capital Medical University, No.45 Changchun Street, Xicheng District, Beijing 100053, China.

Funding

National Natural Science Foundation of China 81820108014 82171396
6 · The paper itself

Abstract

Multiple sclerosis (MS) is the most common inflammatory demyelinating disease of the central nervous system. 'Omics' technologies (genomics, transcriptomics, proteomics) and associated drug information have begun reshaping our understanding of multiple sclerosis. However, these data are scattered across numerous references, making them challenging to fully utilize. We manually mined and compiled these data within the Multiple Sclerosis Gene Database (MSGD) database, intending to continue updating it in the future. We screened 5485 publications and constructed the current version of MSGD. MSGD comprises 6255 entries, including 3274 variant entries, 1175 RNA entries, 418 protein entries, 313 knockout entries, 612 drug entries and 463 high-throughput entries. Each entry contains detailed information, such as species, disease type, detailed gene descriptions (such as official gene symbols), and original references. MSGD is freely accessible and provides a user-friendly web interface. Users can easily search for genes of interest, view their expression patterns and detailed information, manage gene sets and submit new MS-gene associations through the platform. The primary principle behind MSGD's design is to provide an exploratory platform, aiming to minimize filtration and interpretation barriers while ensuring highly accessible presentation of data. This initiative is expected to significantly assist researchers in deciphering gene mechanisms and improving the prevention, diagnosis and treatment of MS. Database URL: http://bio-bigdata.hrbmu.edu.cn/MSGD.

Indexed as

Databases, GeneticMultiple SclerosisProteomicsTranscriptomeData CurationGenomicsHumans

Identifiers

PMID38788333
PMCPMC11126313

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.