Evidence map›Paper›PMID 38787918›Full record

ArticleeLife2024

Metabolite profiling of human renal cell carcinoma reveals tissue-origin dominance in nutrient availability.

Keene L Abbott, Ahmed Ali, Bradley I Reinfeld, Amy Deik, Sonu Subudhi, Madelyn D Landis, Rachel A Hongo, Kirsten L Young, Tenzin Kunchok, Christopher S Nabel and 11 more

Abstract read
In one paragraph

Article in eLife, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

21 authors.

Keene L Abbott *Department of Biology, Massachusetts Institute of Technology, Cambridge, United States.ORCID https://orcid.org/0000-0002-6166-704X
Ahmed Ali *Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, United States.
Bradley I Reinfeld *Medical Scientist Training Program, Vanderbilt University, Nashville, United States.
Amy DeikBroad Institute of MIT and Harvard, Cambridge, United States.ORCID https://orcid.org/0000-0002-9687-0953
Sonu SubudhiSteele Laboratories of Tumor Biology, Department of Radiation Oncology, Massachusetts General Hospital and Harvard Medical School, Boston, United States.ORCID https://orcid.org/0000-0002-5937-1880
Madelyn D LandisDepartment of Medicine, Vanderbilt University Medical Center (VUMC), Nashville, United States.
Rachel A HongoDepartment of Medicine, Vanderbilt University Medical Center (VUMC), Nashville, United States.
Kirsten L YoungDepartment of Medicine, Vanderbilt University Medical Center (VUMC), Nashville, United States.
Tenzin KunchokWhitehead Institute for Biomedical Research, Cambridge, United States.
Christopher S NabelKoch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, United States.
Kayla D CrowderWhitehead Institute for Biomedical Research, Cambridge, United States.ORCID https://orcid.org/0000-0002-0861-6489
Johnathan R KentDepartment of Surgery, University of Chicago Medicine, Chicago, United States.
Maria Lucia L MadariagaDepartment of Surgery, University of Chicago Medicine, Chicago, United States.
Rakesh K JainSteele Laboratories of Tumor Biology, Department of Radiation Oncology, Massachusetts General Hospital and Harvard Medical School, Boston, United States.
Kathryn E BeckermannDepartment of Medicine, Vanderbilt University Medical Center (VUMC), Nashville, United States.
Caroline A LewisWhitehead Institute for Biomedical Research, Cambridge, United States.
Clary B ClishBroad Institute of MIT and Harvard, Cambridge, United States.
Alexander MuirBen May Department of Cancer Research, University of Chicago, Chicago, United States.ORCID https://orcid.org/0000-0003-3811-3054
W Kimryn RathmellDepartment of Medicine, Vanderbilt University Medical Center (VUMC), Nashville, United States.
Jeffrey RathmellVanderbilt Center for Immunobiology and Vanderbilt-Ingram Cancer Center, VUMC, Nashville, United States.ORCID https://orcid.org/0000-0002-4106-3396
Matthew G Vander HeidenDepartment of Biology, Massachusetts Institute of Technology, Cambridge, United States.ORCID https://orcid.org/0000-0002-6702-4192

Funding

VIRUS PRODUCTION COREP30CA014051 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI Jacqueline A. Lees · 1985 to 2026
$93.9M
PRE-DOCTORAL TRAINING IN THE BIOLOGICAL SCIENCEST32GM007287 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BELL, STEPHEN P., KEATING, AMY E · 1985 to 2019
$40.8M
ROLE OF DIETARY CONSTITUENTS ON GENE EXPRESSION IN INTESTINAL EPITHELIUMP30DK040561 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI Elizabeth Austen Lawson, Takara Leah Stanley · 1994 to 2026
$31.6M
Translational Analysis CoreP30DK058404 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI MARY Kay WASHINGTON · 2002 to 2026
$29.9M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007347 · NIGMS · VANDERBILT UNIVERSITY · PI WILLIAMS, CHRISTOPHER S. · 1985 to 2023
$26.3M
Physician Scientist Training in Cancer ResearchT32CA009172 · NCI · DANA-FARBER CANCER INSTITUTE · PI Jennifer R Brown, James A. DeCaprio · 1985 to 2026
$17.1M
Understanding the role of metabolism in cancerR35CA242379 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI VANDER HEIDEN, MATTHEW G. · 2019 to 2025
$5.8M
Metabolic Barriers to T Cell Activation in Clear Cell Renal Cell CarcinomaR01CA217987 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Jeffrey C Rathmell · 2018 to 2026
$4.3M
Targeting physical stress-driven mechanisms to overcome glioblastoma treatment resistanceU01CA261842 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI JAIN, RAKESH K., MUNN, LANCE L. · 2021 to 2025
$3.1M
Reprogramming PDAC tumor microenvironment to improve immunotherapyU01CA224348 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI BOUCHER, YVES, JAIN, RAKESH K. · 2017 to 2021
$2.9M
Improving treatment of HER2+ breast cancer brain metastasis by targeting lipid metabolismR01CA259253 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI JAIN, RAKESH K., VANDER HEIDEN, MATTHEW G. · 2021 to 2025
$2.3M
Reengineering obesity-induced abnormal microenvironment to improve PDAC treatmentR01CA208205 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI FUKUMURA, DAI, JAIN, RAKESH K. · 2017 to 2020
$2.2M
Department of Defense Education Activity W81XWH-22-1-0418Howard Hughes Medical Institute Medical Research FellowNational Science Foundation DGE-1122374NCI NIH HHS F30 CA247202NCI NIH HHS F30CA247202NCI NIH HHS F31 CA271787NCI NIH HHS F31CA271787NCI NIH HHS P30 CA014051NCI NIH HHS P30CA1405141NCI NIH HHS R01 CA208205NCI NIH HHS R01 CA217987NCI NIH HHS R01CA217987NCI NIH HHS R01 CA259253NCI NIH HHS R01 CA269672NCI NIH HHS R35 CA242379NCI NIH HHS R35CA242379NCI NIH HHS T32 CA009172NCI NIH HHS U01 CA224348NCI NIH HHS U01 CA261842NIDDK NIH HHS P30 DK040561NIDDK NIH HHS P30 DK058404NIGMS NIH HHS T32 GM007287NIGMS NIH HHS T32 GM007347NIH HHS R01-CA208205NIH HHS R01-CA259253NIH HHS R01-NS118929NIH HHS T32GM007287NIH HHS T32GM007347NIH HHS U01-CA224348NIH HHS U01CA261842NINDS NIH HHS R01 NS118929
6 · The paper itself

Abstract

The tumor microenvironment is a determinant of cancer progression and therapeutic efficacy, with nutrient availability playing an important role. Although it is established that the local abundance of specific nutrients defines the metabolic parameters for tumor growth, the factors guiding nutrient availability in tumor compared to normal tissue and blood remain poorly understood. To define these factors in renal cell carcinoma (RCC), we performed quantitative metabolomic and comprehensive lipidomic analyses of tumor interstitial fluid (TIF), adjacent normal kidney interstitial fluid (KIF), and plasma samples collected from patients. TIF nutrient composition closely resembles KIF, suggesting that tissue-specific factors unrelated to the presence of cancer exert a stronger influence on nutrient levels than tumor-driven alterations. Notably, select metabolite changes consistent with known features of RCC metabolism are found in RCC TIF, while glucose levels in TIF are not depleted to levels that are lower than those found in KIF. These findings inform tissue nutrient dynamics in RCC, highlighting a dominant role of non-cancer-driven tissue factors in shaping nutrient availability in these tumors.

Indexed as

Carcinoma, Renal CellKidney NeoplasmsMetabolomicsTumor MicroenvironmentGlucoseHumansKidneyLipidomicsPrincipal Component AnalysisGlucosecancercancer biologyhumanmetabolismtumor microenvironment

Identifiers

PMID38787918
PMCPMC11126308

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