Evidence map›Paper›PMID 38787369›Full record

ArticleeLife2024

Biobank-wide association scan identifies risk factors for late-onset Alzheimer's disease and endophenotypes.

Donghui Yan, Bowen Hu, Burcu F Darst, Shubhabrata Mukherjee, Brian W Kunkle, Yuetiva Deming, Logan Dumitrescu, Yunling Wang, Adam Naj, Amanda Kuzma and 9 more

Abstract read
In one paragraph

Article in eLife, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Donghui Yan *University of Wisconsin-Madison, Madison, United States.ORCID https://orcid.org/0000-0002-5433-0764
Bowen Hu *Department of Statistics, University of Wisconsin-Madison, Madison, United States.
Burcu F DarstDepartment of Population Health Sciences, University of Wisconsin-Madison, Madison, United States.
Shubhabrata MukherjeeDivision of General Internal Medicine, Department of Medicine, University of Washington, Seattle, United States.
Brian W KunkleUniversity of Miami Miller School of Medicine, Miami, United States.
Yuetiva DemingDepartment of Population Health Sciences, University of Wisconsin-Madison, Madison, United States.ORCID https://orcid.org/0000-0001-7512-5703
Logan DumitrescuVanderbilt Memory and Alzheimer's Center, Vanderbilt University Medical Center, Vanderbilt University School of Medicine, Nashville, United States.
Yunling WangUniversity of Wisconsin-Madison, Madison, United States.
Adam NajSchool of Medicine, University of Pennsylvania, Philadelphia, United States.
Amanda KuzmaSchool of Medicine, University of Pennsylvania, Philadelphia, United States.
Yi ZhaoSchool of Medicine, University of Pennsylvania, Philadelphia, United States.
Hyunseung KangDepartment of Statistics, University of Wisconsin-Madison, Madison, United States.
Sterling C JohnsonWisconsin Alzheimer's Institute, University of Wisconsin School of Medicine and Public Health, Madison, United States.
Cruchaga CarlosDepartment of Psychiatry, Washington University in St. Louis, St. Louis, United States.
Timothy J HohmanVanderbilt Memory and Alzheimer's Center, Vanderbilt University Medical Center, Vanderbilt University School of Medicine, Nashville, United States.
Paul K CraneDivision of General Internal Medicine, Department of Medicine, University of Washington, Seattle, United States.
Corinne D EngelmanDepartment of Population Health Sciences, University of Wisconsin-Madison, Madison, United States.
Alzheimer’s Disease Genetics Consortium (ADGC)
Qiongshi LuDepartment of Statistics, University of Wisconsin-Madison, Madison, United States.ORCID https://orcid.org/0000-0002-4514-0969

Funding

National Centralized Repository for Alzheimer's Disease and Related Dementias (NCRAD)U24AG021886 · NIA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI TATIANA M. FOROUD · 2002 to 2026
$119.8M
University of Wisconsin Institute for Clinical and Translational ResearchUL1TR002373 · NCATS · UNIVERSITY OF WISCONSIN-MADISON · PI ELIZABETH S BURNSIDE, Allan R. Brasier · 2017 to 2026
$75.9M
NATIONAL ALZHEIMERS COORDINATING CENTER (NACC)U01AG016976 · NIA · UNIVERSITY OF WASHINGTON · PI KUKULL, WALTER ANTHONY · 1999 to 2020
$72.8M
Alzheimer's Disease Genetics ConsortiumU01AG032984 · NIA · UNIVERSITY OF PENNSYLVANIA · PI SCHELLENBERG, GERARD DAVID · 2009 to 2024
$60.4M
THE NIA GENETICS OF ALZHEIMER'S DISEASE DATA STORAGE SITEU24AG041689 · NIA · UNIVERSITY OF PENNSYLVANIA · PI LI-SAN WANG · 2012 to 2026
$42.3M
Wisconsin Registry for Alzheimer's Prevention: Sex Differences in DNA MethylationR01AG027161 · NIA · UNIVERSITY OF WISCONSIN-MADISON · PI Nathaniel Ark Chin, Sterling C Johnson · 2007 to 2026
$35.6M
Institutional Clinical and Translational Science AwardUL1TR000427 · NCATS · UNIVERSITY OF WISCONSIN-MADISON · PI DREZNER, MARC KENNETH · 2012 to 2016
$32.2M
Research Training for Computation and Informatics in Biology and MedicineT15LM007359 · NLM · UNIVERSITY OF WISCONSIN-MADISON · PI Mark W. Craven, Colin Noel Dewey · 2002 to 2026
$22.6M
CHARGE Consortium: Omics Discovery for CVD and Aging PhenotypesR01HL105756 · NHLBI · UNIVERSITY OF WASHINGTON · PI Bruce M Psaty, NICHOLAS L SMITH · 2011 to 2026
$9.5M
Scientific and Technical CoreP2CHD047873 · NICHD · UNIVERSITY OF WISCONSIN-MADISON · PI Katherine J. Curtis · 2014 to 2026
$5.1M
Collaborative GWAS of Dementia, AD and related MRI and Cognitive EndophenotypesR01AG033193 · NIA · BOSTON UNIVERSITY MEDICAL CAMPUS · PI SESHADRI, SUDHA · 2009 to 2016
$4.4M
Genomic and Metabolomic Data Integration in a Longitudinal Cohort at Risk for Alzheimer's DiseaseRF1AG054047 · NIA · UNIVERSITY OF WISCONSIN-MADISON · PI ENGELMAN, CORINNE D. · 2022 to 2025
$3.8M
Alzheimer's Association ADGC-10-196,728NCATS NIH HHS Clinical and Translational Science Award (CTSA) program, UL1TR000427NCATS NIH HHS UL1 TR000427NCATS NIH HHS UL1 TR002373NHLBI NIH HHS R01 HL105756NIA NIH HHS R01 AG027161NIA NIH HHS R01 AG033193NIA NIH HHS R01 AG054047NIA NIH HHS RF1 AG054047NIA NIH HHS U01 AG016976NIA NIH HHS U01 AG032984NIA NIH HHS U24 AG021886NIA NIH HHS U24 AG041689NICHD NIH HHS P2C HD047873NIH HHS P2C HD047873NIH HHS R01AG054047NIH HHS R01AG27161NIH HHS UL1TR000427NLM NIH HHS T15 LM007359U.S. National Library of Medicine Computation and Informatics in Biology and Medicine Training Program, NLM 5T15LM007359Wellcome Trust
6 · The paper itself

Abstract

Rich data from large biobanks, coupled with increasingly accessible association statistics from genome-wide association studies (GWAS), provide great opportunities to dissect the complex relationships among human traits and diseases. We introduce BADGERS, a powerful method to perform polygenic score-based biobank-wide association scans. Compared to traditional approaches, BADGERS uses GWAS summary statistics as input and does not require multiple traits to be measured in the same cohort. We applied BADGERS to two independent datasets for late-onset Alzheimer's disease (AD; n=61,212). Among 1738 traits in the UK biobank, we identified 48 significant associations for AD. Family history, high cholesterol, and numerous traits related to intelligence and education showed strong and independent associations with AD. Furthermore, we identified 41 significant associations for a variety of AD endophenotypes. While family history and high cholesterol were strongly associated with AD subgroups and pathologies, only intelligence and education-related traits predicted pre-clinical cognitive phenotypes. These results provide novel insights into the distinct biological processes underlying various risk factors for AD.

Indexed as

Alzheimer DiseaseBiological Specimen BanksEndophenotypesGenome-Wide Association StudyAgedAged, 80 and overFemaleGenetic Predisposition to DiseaseHumansMaleMultifactorial InheritanceRisk FactorsUnited KingdomAlzheimer's diseasegeneticsgenomicsGWAShumanneuroscienceUK-biobank

Identifiers

PMID38787369
PMCPMC11126309

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.