Evidence map›Paper›PMID 38784399›Full record

ArticlePeerJ2024

Comparative genomics reveals high genetic similarity among strains of

Felipe P Vilela, Andrei G Felice, Amanda A Seribelli, Dália P Rodrigues, Siomar C Soares, Marc W Allard, Juliana P Falcão

Abstract readComparative Study
PubMed Full text at PMC Publisher
In one paragraph

Article in PeerJ, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Felipe P VilelaSchool of Pharmaceutical Sciences of Ribeirão Preto, Department of Clinical Analyses, Toxicology and Food Science, Universidade de São Paulo, Ribeirão Preto, São Paulo, Brazil.
Andrei G FeliceInstitute of Biological and Natural Sciences, Department of Microbiology, Immunology and Parasitology, Universidade Federal do Triângulo Mineiro, Uberaba, Minas Gerais, Brazil.
Amanda A SeribelliMedical School of Ribeirão Preto, Department of Cellular and Molecular Biology, Universidade de São Paulo, Ribeirão Preto, São Paulo, Brazil.
Dália P RodriguesOswaldo Cruz Institute, Fundação Oswaldo Cruz, Rio de Janeiro, Rio de Janeiro, Brazil.
Siomar C SoaresInstitute of Biological and Natural Sciences, Department of Microbiology, Immunology and Parasitology, Universidade Federal do Triângulo Mineiro, Uberaba, Minas Gerais, Brazil.
Marc W AllardCenter for Food Safety and Applied Nutrition, U.S. Food and Drug Administration, College Park, MD, United States of America.
Juliana P FalcãoSchool of Pharmaceutical Sciences of Ribeirão Preto, Department of Clinical Analyses, Toxicology and Food Science, Universidade de São Paulo, Ribeirão Preto, São Paulo, Brazil.

Funding

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior—Brasil (CAPES)FDA HHSMaster and PhD student scholarships from FAPESPNational Council for Scientific and Technological Development (CNPq)São Paulo Research Foundation (FAPESP)
6 · The paper itself

Abstract

Background: Methods: Analyses of whole-genome multi-locus sequence typing (wgMLST), using PGAdb-builder, and of fragmented genomes, using Gegenees, were conducted to compare the 80 Brazilian strains to the 18 non-Brazilian genomes. Pangenome analyses and calculations were performed for all Results: wgMLST and Gegenees showed a high genomic similarity among some Brazilian Conclusion: The results presented using different genomic approaches emphasized the significant genomic similarity among Brazilian

Indexed as

Genome, BacterialGenomicsMultilocus Sequence TypingSalmonella entericaAnimalsBrazilFood MicrobiologyHumansPhylogenySalmonella InfectionsSalmonella Infections, AnimalSerogroupComparative genomicsGegeneesPangenome analysisProphagesSalmonella InfantiswgMLSTWhole-genome sequencing

Identifiers

PMID38784399
PMCPMC11114117

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.