Evidence map›Paper›PMID 38784391›Full record

ArticlePeerJ2024

USP22 as a key regulator of glycolysis pathway in osteosarcoma: insights from bioinformatics and experimental approaches.

Qiao Zhang, Jinwei Zhu, Jian Xie, Yurong Gu, Lu Chen

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In one paragraph

Article in PeerJ, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Qiao ZhangDepartment of Orthopaedics, The Second Affiliated Hospital of Nanchang University, Nanchang, Jiangxi, China.
Jinwei ZhuDepartment of Orthopaedics, The Second Affiliated Hospital of Nanchang University, Nanchang, Jiangxi, China.
Jian XieDepartment of Orthopaedics, The Second Affiliated Hospital of Nanchang University, Nanchang, Jiangxi, China.
Yurong GuDepartment of Orthopaedics, The Second Affiliated Hospital of Nanchang University, Nanchang, Jiangxi, China.
Lu ChenDepartment of Orthopaedics, The Second Affiliated Hospital of Nanchang University, Nanchang, Jiangxi, China.ORCID 0009-0005-7057-9526

Funding

Key Projects of Science and Technology Plan of Jiangxi Provincial Department of Education
6 · The paper itself

Abstract

Background: Osteosarcoma is the most common primary malignant bone tumor, but its pathogenesis remains unclear. Ubiquitin-specific processing peptidase 22 (USP22) is reported to be highly expressed and associated with tumor malignancy and prognosis in cancers. However, the role and mechanism of USP22 in osteosarcoma is not fully understood. This study aims to investigate the function and potential mechanism of USP22 in osteosarcoma using bioinformatics analysis combined with experimental validation. Methods: We first integrated transcriptomic datasets and clinical information of osteosarcoma from GEO and TCGA databases to assess the expression and prognostic value of USP22 in osteosarcoma. Then, differential expression analysis and weighted gene co-expression network analysis (WGCNA) were conducted to identify USP22-related co-expressed genes. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses were performed to explore the biological functions and signaling pathways of USP22 co-expressed genes. To validate the accuracy of bioinformatics analyses, we downregulated USP22 expression in osteosarcoma cell line Sao-2 using siRNA and assessed its effect on cell proliferation, migration, invasion, apoptosis, and regulation of key signaling pathways. Results: We found that USP22 was highly expressed in osteosarcoma tissues and correlated with poor prognosis in osteosarcoma patients. USP22 also showed potential as a diagnostic marker for osteosarcoma. In addition, 344 USP22-related co-expressed genes were identified, mainly involved in signaling pathways such as glycolysis, oxidative phosphorylation, spliceosome, thermogenesis, and cell cycle. The Conclusions: USP22 plays a critical role in the occurrence, development, and prognosis of osteosarcoma. USP22 could influence Sao-2 cell proliferation, apoptosis, migration, and invasion by regulating the glycolysis pathway, thereby promoting osteosarcoma progression. Therefore, USP22 may be a potential therapeutic target for the treatment of osteosarcoma.

Indexed as

Bone NeoplasmsCell ProliferationComputational BiologyGlycolysisOsteosarcomaUbiquitin ThiolesteraseApoptosisCell Line, TumorCell MovementGene Expression Regulation, NeoplasticHumansPrognosisSignal TransductionUbiquitin ThiolesteraseUsp22 protein, humanBioinformaticsExperimental validationGlycolysisOsteosarcomaUbiquitin-specific processing peptidase 22 (USP22)

Identifiers

PMID38784391
PMCPMC11114114

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.