Evidence map›Paper›PMID 38783989›Full record

ArticleProceedings. IEEE International Conference on Computer Vision2021

Multi-Class Cell Detection Using Spatial Context Representation.

Shahira Abousamra, David Belinsky, John Van Arnam, Felicia Allard, Eric Yee, Rajarsi Gupta, Tahsin Kurc, Dimitris Samaras, Joel Saltz, Chao Chen

Abstract read
In one paragraph

Article in Proceedings. IEEE International Conference on Computer Vision, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition · 2025
    Article
  3. Article
  4. A Topological Comparison of the Fluorescence Imitating Brightfield Imaging and H&E Imaging.Topology- and graph-informed imaging informatics : first International Workshop, TGI3 2024, Held in Conjunction with MICCAI 2024, Marrakesh, Morocco, October 10, 2024, Proceedings. International Workshop on Topology- and Graph-Informed ... · 2025
    Article
  5. New Spatial Phenotypes from Imaging Uncover Survival Differences for Breast Cancer Patients.ACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine · 2024
    Article
  6. Semi-Supervised Contrastive VAE for Disentanglement of Digital Pathology Images.Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention · 2024
    Article
  7. Article
  8. Spatial Diffusion for Cell Layout Generation.Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention · 2024
    Article
  9. Review
  10. Article
  11. Topology-Guided Multi-Class Cell Context Generation for Digital Pathology.Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition · 2023
    Article
  12. Cross-scale Attention Guided Multi-instance Learning for Crohn's Disease Diagnosis with Pathological Images.Multiscale multimodal medical imaging : Third International Workshop, MMMI 2022, held in conjunction with MICCAI 2022, Singapore, September 22, 2022, proceedings · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Shahira AbousamraStony Brook University, Stony Brook, NY 11794, USA.
David BelinskyStony Brook University, Stony Brook, NY 11794, USA.
John Van ArnamStony Brook University, Stony Brook, NY 11794, USA.
Felicia AllardStony Brook University, Stony Brook, NY 11794, USA.
Eric YeeStony Brook University, Stony Brook, NY 11794, USA.
Rajarsi GuptaStony Brook University, Stony Brook, NY 11794, USA.
Tahsin KurcStony Brook University, Stony Brook, NY 11794, USA.
Dimitris SamarasStony Brook University, Stony Brook, NY 11794, USA.
Joel SaltzStony Brook University, Stony Brook, NY 11794, USA.
Chao ChenStony Brook University, Stony Brook, NY 11794, USA.

Funding

TCIA Sustainment and Scalability - Platforms for Quantitative Imaging Informatics in Precision MedicineU24CA215109 · NCI · UNIV OF ARKANSAS FOR MED SCIS · PI BANERJEE, IMON, PRIOR, FRED WILLIAM · 2017 to 2021
$8.5M
The linkage between Race, Kaiso and the tumor microenvironment in breast cancer health disparitiesR01CA253368 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GARDNER, KEVIN L. · 2020 to 2024
$3.3M
Methods and Tools for Integrating Pathomics Data into Cancer RegistriesUH3CA225021 · NCI · STATE UNIVERSITY NEW YORK STONY BROOK · PI CLIFFORD, GARI DAVID, DURBIN, ERIC B. · 2020 to 2022
$1.9M
NCI NIH HHS R01 CA253368NCI NIH HHS U24 CA215109NCI NIH HHS UH3 CA225021
6 · The paper itself

Abstract

In digital pathology, both detection and classification of cells are important for automatic diagnostic and prognostic tasks. Classifying cells into subtypes, such as tumor cells, lymphocytes or stromal cells is particularly challenging. Existing methods focus on morphological appearance of individual cells, whereas in practice pathologists often infer cell classes through their spatial context. In this paper, we propose a novel method for both detection and classification that explicitly incorporates spatial contextual information. We use the spatial statistical function to describe local density in both a multi-class and a multi-scale manner. Through representation learning and deep clustering techniques, we learn advanced cell representation with both appearance and spatial context. On various benchmarks, our method achieves better performance than state-of-the-arts, especially on the classification task. We also create a new dataset for multi-class cell detection and classification in breast cancer and we make both our code and data publicly available.

Identifiers

PMID38783989
PMCPMC11114143

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.