Evidence map›Paper›PMID 38783375›Full record

ArticleNucleic acids research2024

Transposon DNA sequences facilitate the tissue-specific gene transfer of circulating tumor DNA between human cells.

Munevver Cinar, Lourdes Martinez-Medina, Pavan K Puvvula, Arsen Arakelyan, Badri N Vardarajan, Neil Anthony, Ganji P Nagaraju, Dongkyoo Park, Lei Feng, Faith Sheff and 12 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Munevver CinarDepartment of Hematology and Medical Oncology, Winship Cancer Institute of Emory University, Atlanta, GA, USA.
Lourdes Martinez-MedinaKodikaz Therapeutic Solutions, Inc, New York, NY, USA.
Pavan K PuvvulaKodikaz Therapeutic Solutions, Inc, New York, NY, USA.
Arsen ArakelyanBioinformatics group, Institute of Molecular Biology NAS RA, Yerevan, Armenia.
Badri N VardarajanKodikaz Therapeutic Solutions, Inc, New York, NY, USA.
Neil AnthonyIntegrated Cellular Imaging Core, Winship Cancer Institute of Emory University, Atlanta, GA, USA.
Ganji P NagarajuDivision of hematology and oncology, O'Neal Comprehensive Cancer Center, University of Alabama at Birmingham, Birmingham, AL, USA.
Dongkyoo ParkDepartment of Hematology and Medical Oncology, Winship Cancer Institute of Emory University, Atlanta, GA, USA.
Lei FengKodikaz Therapeutic Solutions, Inc, New York, NY, USA.
Faith SheffPathology and Laboratory Medicine, Winship Cancer Institute of Emory University, Atlanta, GA, USA.
Marina MosunjacPathology and Laboratory Medicine, Winship Cancer Institute of Emory University, Atlanta, GA, USA.
Debra SaxePathology and Laboratory Medicine, Winship Cancer Institute of Emory University, Atlanta, GA, USA.
Steven FlygareDepartment of Computational Biology/ Genetics, The University of Utah, Salt Lake City, UT, USA.
Olatunji B AleseDepartment of Hematology and Medical Oncology, Winship Cancer Institute of Emory University, Atlanta, GA, USA.
Jonathan L KaufmanDepartment of Hematology and Medical Oncology, Winship Cancer Institute of Emory University, Atlanta, GA, USA.
Sagar LonialDepartment of Hematology and Medical Oncology, Winship Cancer Institute of Emory University, Atlanta, GA, USA.
Juan M SarmientoDepartment of Surgery, Winship Cancer Institute of Emory University, Atlanta, GA, USA.
Izidore S LossosDepartment of Medicine, Division of Hematology-Oncology and Molecular and Cellular Pharmacology, Sylvester Comprehensive Cancer Center, University of Miami, Miami, FL, USA.ORCID 0000-0002-9346-9013
Paula M VertinoDepartment of Biomedical Genetics and the Wilmot Cancer Institute, University of Rochester Medical Center, Rochester, NY, USA.ORCID 0000-0001-6165-2019
Jose A LopezBloodworks Northwest Research Institute, Division of Hematology, University of Washington School of Medicine, Seattle, WA, USA.
Bassel El-RayesDivision of hematology and oncology, O'Neal Comprehensive Cancer Center, University of Alabama at Birmingham, Birmingham, AL, USA.
Leon Bernal-MizrachiDepartment of Hematology and Medical Oncology, Winship Cancer Institute of Emory University, Atlanta, GA, USA.ORCID 0000-0001-9775-6688

Funding

Winship Cancer Institute Cancer Center Support GrantP30CA138292 · NCI · EMORY UNIVERSITY · PI Suresh S Ramalingam · 2009 to 2026
$47.5M
Atlanta Clinical and Translational Science Institute (ACTSI) RenewalUL1TR000454 · NCATS · EMORY UNIVERSITY · PI STEPHENS, DAVID S · 2012 to 2016
$25.8M
Relaxed Polymerase Pausing as a Driver of Epigenetic Plasticity and Cancer Cell InvasionR01CA250531 · NCI · UNIVERSITY OF ROCHESTER · PI VERTINO, PAULA M. · 2021 to 2025
$2.2M
Identify the Mechanisms of LMO2-Mediated Inhibition of Homologous Recombination and Establish PARP-Targeted Synthetic Lethality as a New Therapy for DLBCLR01CA233945 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI LOSSOS, IZIDORE S, VERDUN, RAMIRO ERNESTO · 2019 to 2023
$1.8M
Clinical and Translational Science Award Program UL1TR000454Dwoskin, and Anthony Rizzo Families FoundationsGeorgia Research Alliance Venture Development Award 1R01CA233945Jaime Erin Follicular Lymphoma Research ConsortiumNCATS NIH HHS UL1 TR000454NCI NIH HHS 2P30CA138292-04NCI NIH HHS P30 CA138292NCI NIH HHS R01 CA233945NCI NIH HHS R01 CA250531NIH HHSWinship Cancer Institute of Emory University
6 · The paper itself

Abstract

The exchange of genes between cells is known to play an important physiological and pathological role in many organisms. We show that circulating tumor DNA (ctDNA) facilitates cell-specific gene transfer between human cancer cells and explain part of the mechanisms behind this phenomenon. As ctDNA migrates into the nucleus, genetic information is transferred. Cell targeting and ctDNA integration require ERVL, SINE or LINE DNA sequences. Chemically manufactured AluSp and MER11C sequences replicated multiple myeloma (MM) ctDNA cell targeting and integration. Additionally, we found that ctDNA may alter the treatment response of MM and pancreatic cancer models. This study shows that retrotransposon DNA sequences promote cancer gene transfer. However, because cell-free DNA has been detected in physiological and other pathological conditions, our findings have a broader impact than just cancer. Furthermore, the discovery that transposon DNA sequences mediate tissue-specific targeting will open up a new avenue for the delivery of genes and therapies.

Indexed as

Circulating Tumor DNADNA Transposable ElementsAnimalsCell Line, TumorGene Transfer TechniquesHumansMiceMultiple MyelomaOrgan SpecificityPancreatic NeoplasmsRetroelementsCirculating Tumor DNADNA Transposable ElementsRetroelements

Identifiers

PMID38783375
PMCPMC11260451

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.