Evidence map›Paper›PMID 38783119›Full record

ArticleNucleic acids research2024

Drugst.One - a plug-and-play solution for online systems medicine and network-based drug repurposing.

Andreas Maier, Michael Hartung, Mark Abovsky, Klaudia Adamowicz, Gary D Bader, Sylvie Baier, David B Blumenthal, Jing Chen, Maria L Elkjaer, Carlos Garcia-Hernandez and 30 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Drug Repurposing for Kala-Azar.Pharmaceutics · 2025
    Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

40 authors.

Andreas MaierInstitute for Computational Systems Biology, University of Hamburg, Hamburg, Germany.ORCID 0000-0003-4408-0068
Michael HartungInstitute for Computational Systems Biology, University of Hamburg, Hamburg, Germany.ORCID 0000-0002-3992-0125
Mark AbovskyDivision of Orthopaedic Surgery, Schroeder Arthritis Institute, Toronto, Canada.
Klaudia AdamowiczInstitute for Computational Systems Biology, University of Hamburg, Hamburg, Germany.ORCID 0000-0002-9418-4386
Gary D BaderDepartment of Molecular Genetics, University of Toronto, Toronto, ON, Canada.ORCID 0000-0003-0185-8861
Sylvie BaierData Science in Systems Biology, TUM School of Life Sciences, Technical University of Munich, Munich, Germany.ORCID 0000-0002-9120-6279
David B BlumenthalDepartment Artificial Intelligence in Biomedical Engineering (AIBE), Friedrich-Alexander University Erlangen-Nürnberg (FAU), 91052 Erlangen, Germany.ORCID 0000-0001-8651-750X
Jing ChenDepartment of Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA.
Maria L ElkjaerInstitute for Computational Systems Biology, University of Hamburg, Hamburg, Germany.ORCID 0000-0002-8596-142X
Carlos Garcia-HernandezBarcelona Supercomputing Center (BSC), 08034 Barcelona, Spain.
Mohamed HelmyVaccine and Infectious Disease Organization (VIDO), University of Saskatchewan, Canada.
Markus HoffmannData Science in Systems Biology, TUM School of Life Sciences, Technical University of Munich, Munich, Germany.ORCID 0000-0002-1920-288X
Igor JurisicaDivision of Orthopaedic Surgery, Schroeder Arthritis Institute, Toronto, Canada.ORCID 0000-0002-2507-946X
Max KotlyarDivision of Orthopaedic Surgery, Schroeder Arthritis Institute, Toronto, Canada.ORCID 0000-0002-1111-8667
Olga LazarevaDivision of Computational Genomics and Systems Genetics, German Cancer Research Center (DKFZ), 69120 Heidelberg, Germany.ORCID 0000-0001-9546-7807
Hagai LeviBlavatnik School of Computer Science, Tel-Aviv University, Tel-Aviv, Israel.ORCID 0000-0002-7975-4766
Markus ListData Science in Systems Biology, TUM School of Life Sciences, Technical University of Munich, Munich, Germany.ORCID 0000-0002-0941-4168
Sebastian LobentanzerHeidelberg University, Faculty of Medicine, and Heidelberg University Hospital, Institute for Computational Biomedicine, Bioquant, Heidelberg, Germany.ORCID 0000-0003-3399-6695
Joseph LoscalzoDepartment of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0002-1153-8047
Noel Malod-DogninBarcelona Supercomputing Center (BSC), 08034 Barcelona, Spain.
Quirin ManzData Science in Systems Biology, TUM School of Life Sciences, Technical University of Munich, Munich, Germany.ORCID 0000-0002-5706-2718
Julian MatschinskeInstitute for Computational Systems Biology, University of Hamburg, Hamburg, Germany.ORCID 0000-0001-7143-7734
Miles MeeDepartment of Molecular Genetics, University of Toronto, Toronto, ON, Canada.
Mhaned OubounytInstitute for Computational Systems Biology, University of Hamburg, Hamburg, Germany.ORCID 0000-0001-5011-6683
Chiara PastrelloDivision of Orthopaedic Surgery, Schroeder Arthritis Institute, Toronto, Canada.ORCID 0000-0002-1934-7472
Alexander R PicoInstitute of Data Science and Biotechnology, Gladstone Institutes, 1650 Owens Street, San Francisco, 94158 California, USA.ORCID 0000-0001-5706-2163
Rudolf T PillichDepartment of Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA.ORCID 0000-0001-8682-0568
Julian M PoschenriederInstitute for Computational Systems Biology, University of Hamburg, Hamburg, Germany.ORCID 0009-0004-5948-3892
Dexter PrattDepartment of Medicine, University of California San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA.
Nataša PržuljBarcelona Supercomputing Center (BSC), 08034 Barcelona, Spain.ORCID 0000-0002-1290-853X
Sepideh SadeghInstitute for Computational Systems Biology, University of Hamburg, Hamburg, Germany.ORCID 0000-0003-4851-8848
Julio Saez-RodriguezHeidelberg University, Faculty of Medicine, and Heidelberg University Hospital, Institute for Computational Biomedicine, Bioquant, Heidelberg, Germany.ORCID 0000-0002-8552-8976
Suryadipto SarkarDepartment Artificial Intelligence in Biomedical Engineering (AIBE), Friedrich-Alexander University Erlangen-Nürnberg (FAU), 91052 Erlangen, Germany.ORCID 0000-0001-9131-0407
Gideon ShakedBlavatnik School of Computer Science, Tel-Aviv University, Tel-Aviv, Israel.ORCID 0000-0001-5822-3010
Ron ShamirBlavatnik School of Computer Science, Tel-Aviv University, Tel-Aviv, Israel.ORCID 0000-0003-1889-9870
Nico TrummerData Science in Systems Biology, TUM School of Life Sciences, Technical University of Munich, Munich, Germany.ORCID 0000-0002-4639-0935
Ugur TurhanInstitute for Computational Systems Biology, University of Hamburg, Hamburg, Germany.
Rui-Sheng WangDepartment of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115, USA.ORCID 0000-0003-4920-4357
Olga ZolotarevaInstitute for Computational Systems Biology, University of Hamburg, Hamburg, Germany.ORCID 0000-0002-9424-8052
Jan BaumbachInstitute for Computational Systems Biology, University of Hamburg, Hamburg, Germany.ORCID 0000-0002-0282-0462

Funding

Canada Foundation for Innovation #225404Deutsche Forschungsgemeinschaft 422216132European Research Council 770827European Union 101057619European Union's Horizon 2020 965193German Excellence InitiativeGerman Federal Ministry of Education and Research (BMBF) F031L0214AHorizon 2020 777111Horizon Europe project Repo4EUIBM and Ian Lawson van Toch FundNatural Sciences Research Council NSERC #203475NIDDK NIH HHSOntario Research Fund RDI #34876Spanish State Research Agency PID2019-105500GB-I00Swiss State Secretariat for Education, Research and Innovation (SERI) 22.00115VILLUM Young Investigator 13154
6 · The paper itself

Abstract

In recent decades, the development of new drugs has become increasingly expensive and inefficient, and the molecular mechanisms of most pharmaceuticals remain poorly understood. In response, computational systems and network medicine tools have emerged to identify potential drug repurposing candidates. However, these tools often require complex installation and lack intuitive visual network mining capabilities. To tackle these challenges, we introduce Drugst.One, a platform that assists specialized computational medicine tools in becoming user-friendly, web-based utilities for drug repurposing. With just three lines of code, Drugst.One turns any systems biology software into an interactive web tool for modeling and analyzing complex protein-drug-disease networks. Demonstrating its broad adaptability, Drugst.One has been successfully integrated with 21 computational systems medicine tools. Available at https://drugst.one, Drugst.One has significant potential for streamlining the drug discovery process, allowing researchers to focus on essential aspects of pharmaceutical treatment research.

Indexed as

Drug RepositioningSoftwareComputational BiologyDrug DiscoveryHumansInternetSystems Biology

Identifiers

PMID38783119
PMCPMC11223884

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.