Evidence map›Paper›PMID 38782939›Full record

SynthesisNPJ biofilms and microbiomes2024

Systematic review of associations between gut microbiome composition and stunting in under-five children.

Mwelwa Chibuye, Daniel R Mende, Rene Spijker, Michelo Simuyandi, Chaluma C Luchen, Samuel Bosomprah, Roma Chilengi, Constance Schultsz, Vanessa C Harris

Abstract readSystematic Review
In one paragraph

Synthesis in NPJ biofilms and microbiomes, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Trial
  2. Review
  3. Article
  4. Article
  5. Clostridium Abundance and Lower Weight-for-AgeJMIR pediatrics and parenting · 2026
    Article
  6. Foods (Basel, Switzerland) · 2026
    Article
  7. Review
  8. Review
  9. Article
  10. Review
  11. Review
  12. Article
  13. Article
  14. One Health, One Microbiome.Microbiome · 2025
    Review
  15. Observational
  16. Article
  17. The Gut Microbiota of Peruvian Children Under the Age of Two During the Complementary Feeding Period.International journal of environmental research and public health · 2025
    Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Mwelwa ChibuyeDepartment of Global Health, Amsterdam Institute for Global Health and Development (AIGHD), Amsterdam University Medical Centers, University of Amsterdam, Amsterdam, The Netherlands.ORCID http://orcid.org/0000-0002-7609-9698
Daniel R MendeAmsterdam Institute of Infection and Immunity, Amsterdam University Medical Centers, Amsterdam, The Netherlands.ORCID http://orcid.org/0000-0001-6831-4557
Rene SpijkerDepartment of Global Health, Amsterdam Institute for Global Health and Development (AIGHD), Amsterdam University Medical Centers, University of Amsterdam, Amsterdam, The Netherlands.
Michelo SimuyandiResearch Division, Centre for Infectious Disease Research in Zambia, Lusaka, Zambia.ORCID http://orcid.org/0000-0002-7348-2835
Chaluma C LuchenDepartment of Global Health, Amsterdam Institute for Global Health and Development (AIGHD), Amsterdam University Medical Centers, University of Amsterdam, Amsterdam, The Netherlands.ORCID http://orcid.org/0000-0002-3093-4635
Samuel BosomprahResearch Division, Centre for Infectious Disease Research in Zambia, Lusaka, Zambia.
Roma ChilengiResearch Division, Centre for Infectious Disease Research in Zambia, Lusaka, Zambia.
Constance SchultszDepartment of Global Health, Amsterdam Institute for Global Health and Development (AIGHD), Amsterdam University Medical Centers, University of Amsterdam, Amsterdam, The Netherlands.
Vanessa C HarrisDepartment of Global Health, Amsterdam Institute for Global Health and Development (AIGHD), Amsterdam University Medical Centers, University of Amsterdam, Amsterdam, The Netherlands. v.c.harris@amsterdamumc.nl.ORCID http://orcid.org/0000-0002-4881-5263

Funding

Enterovirus interference with rotavirus vaccine replication and immunityR01AI173360 · NIAID · WASHINGTON UNIVERSITY · PI Megan T Baldridge, Vanessa Catherine HARRIS · 2023 to 2026
$2.9M
NIAID NIH HHS R01 AI173360Wellcome TrustWellcome Trust (Wellcome) 219829/Z/19/Z
6 · The paper itself

Abstract

Childhood stunting is associated with impaired cognitive development and increased risk of infections, morbidity, and mortality. The composition of the enteric microbiota may contribute to the pathogenesis of stunting. We systematically reviewed and synthesized data from studies using high-throughput genomic sequencing methods to characterize the gut microbiome in stunted versus non-stunted children under 5 years in LMICs. We included 14 studies from Asia, Africa, and South America. Most studies did not report any significant differences in the alpha diversity, while a significantly higher beta diversity was observed in stunted children in four out of seven studies that reported beta diversity. At the phylum level, inconsistent associations with stunting were observed for Bacillota, Pseudomonadota, and Bacteroidota phyla. No single genus was associated with stunted children across all 14 studies, and some associations were incongruent by specific genera. Nonetheless, stunting was associated with an abundance of pathobionts that could drive inflammation, such as Escherichia/Shigella and Campylobacter, and a reduction of butyrate producers, including Faecalibacterium, Megasphera, Blautia, and increased Ruminoccoccus. An abundance of taxa thought to originate in the oropharynx was also reported in duodenal and fecal samples of stunted children, while metabolic pathways, including purine and pyrimidine biosynthesis, vitamin B biosynthesis, and carbohydrate and amino acid degradation pathways, predicted linear growth. Current studies show that stunted children can have distinct microbial patterns compared to non-stunted children, which could contribute to the pathogenesis of stunting.

Indexed as

BacteriaGastrointestinal MicrobiomeGrowth DisordersChild, PreschoolFecesHigh-Throughput Nucleotide SequencingHumansInfantInfant, Newborn

Identifiers

PMID38782939
PMCPMC11116508

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.