Evidence map›Paper›PMID 38782786›Full record

ArticleJournal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry2024

The critical role of a conserved lysine residue in periplasmic nitrate reductase catalyzed reactions.

Nitai C Giri, Breeanna Mintmier, Manohar Radhakrishnan, Jonathan W Mielke, Jarett Wilcoxen, Partha Basu

Abstract read
In one paragraph

Article in Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Recent Progress in Understanding the Mechanism of Formate Dehydrogenases.Chembiochem : a European journal of chemical biology · 2026
    Review
  2. Structure and function of periplasmic nitrate reductase.Biochemical Society transactions · 2026
    Review
  3. Article
  4. Nitrate-Nitrite Interplay in the Nitrogen Biocycle.Molecules (Basel, Switzerland) · 2025
    Review
  5. Article
  6. Insights into periplasmic nitrate reductase function under single turnover.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2024
    Article
  7. Active Site Characterization of aInorganic chemistry · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Nitai C GiriDepartment of Chemistry and Chemical Biology, Indiana University Indianapolis, Indianapolis, IN, USA.
Breeanna MintmierDepartment of Chemistry and Chemical Biology, Indiana University Indianapolis, Indianapolis, IN, USA.
Manohar RadhakrishnanDepartment of Chemistry and Chemical Biology, Indiana University Indianapolis, Indianapolis, IN, USA.
Jonathan W MielkeDepartment of Chemistry and Biochemistry, University of Wisconsin-Milwaukee, Milwaukee, WI, USA.
Jarett WilcoxenDepartment of Chemistry and Biochemistry, University of Wisconsin-Milwaukee, Milwaukee, WI, USA. jarettw@uwm.edu.
Partha BasuDepartment of Chemistry and Chemical Biology, Indiana University Indianapolis, Indianapolis, IN, USA. basup@iu.edu.ORCID 0000-0002-1232-418X

Funding

Investigation of the Molybdenum Cofactor through Chemical, Biochemical and Biophysical StudiesR15GM139064 · NIGMS · INDIANA UNIVERSITY INDIANAPOLIS · PI BASU, PARTHA · 2020 to 2024
$934k
National Science Foundation CHE 2003752NIGMS NIH HHS GM 139064NIGMS NIH HHS R15 GM139064
6 · The paper itself

Abstract

Periplasmic nitrate reductase NapA from Campylobacter jejuni (C. jejuni) contains a molybdenum cofactor (Moco) and a 4Fe-4S cluster and catalyzes the reduction of nitrate to nitrite. The reducing equivalent required for the catalysis is transferred from NapC → NapB → NapA. The electron transfer from NapB to NapA occurs through the 4Fe-4S cluster in NapA. C. jejuni NapA has a conserved lysine (K79) between the Mo-cofactor and the 4Fe-4S cluster. K79 forms H-bonding interactions with the 4Fe-4S cluster and connects the latter with the Moco via an H-bonding network. Thus, it is conceivable that K79 could play an important role in the intramolecular electron transfer and the catalytic activity of NapA. In the present study, we show that the mutation of K79 to Ala leads to an almost complete loss of activity, suggesting its role in catalytic activity. The inhibition of C. jejuni NapA by cyanide, thiocyanate, and azide has also been investigated. The inhibition studies indicate that cyanide inhibits NapA in a non-competitive manner, while thiocyanate and azide inhibit NapA in an uncompetitive manner. Neither inhibition mechanism involves direct binding of the inhibitor to the Mo-center. These results have been discussed in the context of the loss of catalytic activity of NapA K79A variant and a possible anion binding site in NapA has been proposed.

Indexed as

Campylobacter jejuniLysineNitrate ReductaseBiocatalysisPeriplasmLysineNitrate Reductase4Fe–4S clusterCampylobacter jejuniMolybdenumNitrate reductase

Identifiers

PMID38782786
PMCPMC12121628

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.