Evidence map›Paper›PMID 38781420›Full record

ArticleJournal of computational biology : a journal of computational molecular cell biology2024

A Comparative Study of Gene Co-Expression Thresholding Algorithms.

Carissa Bleker, Stephen K Grady, Michael A Langston

Abstract readComparative Study
In one paragraph

Article in Journal of computational biology : a journal of computational molecular cell biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Link Prediction in Multipartite Graphs With Application to Drug Repositioning Studies.IEEE transactions on computational biology and bioinformatics
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Carissa BlekerDepartment of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Stephen K GradyDepartment of Electrical Engineering and Computer Science, University of Tennessee, Knoxville, Tennessee, USA.ORCID 0000-0002-1599-3338
Michael A LangstonDepartment of Electrical Engineering and Computer Science, University of Tennessee, Knoxville, Tennessee, USA.

Funding

Pregnancy-Associated MortalityR01HD092653 · NICHD · TULANE UNIVERSITY OF LOUISIANA · PI WALLACE, MAEVE E · 2018 to 2022
$1.6M
NICHD NIH HHS R01 HD092653
6 · The paper itself

Abstract

The thresholding problem is studied in the context of graph theoretical analysis of gene co-expression data. A number of thresholding methodologies are described, implemented, and tested over a large collection of graphs derived from real high-throughput biological data. Comparative results are presented and discussed.

Indexed as

AlgorithmsGene Expression ProfilingComputational BiologyGene Regulatory NetworksHumansbiological data analysisgraph theoretical algorithmsthresholding

Identifiers

PMID38781420
PMCPMC11698664

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.