Evidence map›Paper›PMID 38781015›Full record

ArticleJCI insight2024

HIV infection and ART exposure affect tumor TCR repertoire of diffuse large B cell lymphoma.

Sophia M Roush, Jenny Coelho, Alexander M Xu, Kaushik Puranam, Marriam Mponda, Edwards Kasonkanji, Maurice Mulenga, Tamiwe Tomoka, Jonathan Galeotti, Amy Brownlee and 7 more

Abstract read
In one paragraph

Article in JCI insight, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Sophia M RoushDepartment of Pathology and Laboratory Medicine, School of Medicine, University of North Carolina, Chapel Hill, North Carolina, USA.
Jenny CoelhoDepartment of Pathology and Laboratory Medicine, School of Medicine, University of North Carolina, Chapel Hill, North Carolina, USA.
Alexander M XuSamuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center, Los Angeles, California, USA.
Kaushik PuranamUniversity of North Carolina Project Malawi, Lilongwe, Malawi.
Marriam MpondaUniversity of North Carolina Project Malawi, Lilongwe, Malawi.
Edwards KasonkanjiUniversity of North Carolina Project Malawi, Lilongwe, Malawi.
Maurice MulengaUniversity of North Carolina Project Malawi, Lilongwe, Malawi.
Tamiwe TomokaUniversity of North Carolina Project Malawi, Lilongwe, Malawi.
Jonathan GaleottiDepartment of Pathology and Laboratory Medicine, School of Medicine, University of North Carolina, Chapel Hill, North Carolina, USA.
Amy BrownleeDepartment of Pathology and Laboratory Medicine, School of Medicine, University of North Carolina, Chapel Hill, North Carolina, USA.
Hormas GhadiallyDepartment of Pathology, School of Medicine and Oral Health, Kamuzu University of Health Sciences, Lilongwe, Malawi.
Maganizo ChagomeranaUniversity of North Carolina Project Malawi, Lilongwe, Malawi.
Blossom DamaniaUniversity of North Carolina Lineberger Comprehensive Cancer Center, Chapel Hill, North Carolina, USA.
Matthew PainschabUniversity of North Carolina Project Malawi, Lilongwe, Malawi.
Akil MerchantSamuel Oschin Comprehensive Cancer Institute, Cedars-Sinai Medical Center, Los Angeles, California, USA.
Satish GopalNational Cancer Institute Center for Global Health, Rockville, Maryland, USA.
Yuri FedoriwDepartment of Pathology and Laboratory Medicine, School of Medicine, University of North Carolina, Chapel Hill, North Carolina, USA.

Funding

Virology Research Program (Program 4)P30CA016086 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Deborah F. Tate · 1985 to 2026
$201.5M
The Effect of Nanoparticle Encapsulated Resveratrol on Treatment of PeriodontitisKL2TR001882 · NCATS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Elizabeta Nemeth · 2016 to 2026
$13.1M
The road to recovery: An assessment of patient-reported quality of life among cancer survivors in Malawi.U54CA254564 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DAMANIA, BLOSSOM A · 2020 to 2024
$6.1M
UNC Integrated Translational Oncology Program (UNC-iTOP)T32CA244125 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI WILLIAM Y. KIM, Jen Jen Yeh · 2019 to 2026
$3.9M
Spatially resolved, single cell biomarkers of B cell lymphomaR01CA266544 · NCI · CEDARS-SINAI MEDICAL CENTER · PI Akil Merchant · 2022 to 2026
$3.2M
Malawi Cancer Outcomes Research Program (M-CORP)D43CA260641 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI CHINULA, LAMECK, FEDORIW, YURI · 2021 to 2025
$1.3M
Safety, efficacy, and cost-effectiveness of rituximab for multicentric Castleman disease in MalawiK01TW011470 · FIC · UNIV OF NORTH CAROLINA CHAPEL HILL · PI PAINSCHAB, MATTHEW SCOTT · 2019 to 2023
$720k
Developing a clinical cohort of histopathologically characterized lymphomaK01TW009488 · FIC · UNIV OF NORTH CAROLINA CHAPEL HILL · PI GOPAL, SATISH · 2012 to 2016
$701k
FIC NIH HHS K01 TW009488FIC NIH HHS K01 TW011470FIC NIH HHS L30 TW011802NCATS NIH HHS KL2 TR001882NCI NIH HHS D43 CA260641NCI NIH HHS P30 CA016086NCI NIH HHS R01 CA266544NCI NIH HHS T32 CA244125NCI NIH HHS U54 CA254564
6 · The paper itself

Abstract

The most common subtype of lymphoma globally, diffuse large B cell lymphoma (DLBCL), is a leading cause of cancer death in people with HIV. The restructuring of the T cell compartment because of HIV infection and antiretroviral therapy (ART) may have implications for modern treatment selection, but current understanding of these dynamic interactions is limited. Here, we investigated the T cell response to DLBCL by sequencing the T cell receptor (TCR) repertoire in a cohort of HIV-negative (HIV-), HIV+/ART-experienced, and HIV+/ART-naive patients with DLBCL. HIV+/ART-naive tumor TCR repertoires were more clonal and more distinct from each other than HIV- and HIV+/ART-experienced ones. Further, increased overlap between tumor and blood TCR repertoires was associated with improved survival and HIV/ART status. Our study describes TCR repertoire characteristics for the first time to our knowledge in an African DLBCL cohort and demonstrates contributions of HIV infection and ART exposure to the DLBCL TCR repertoire.

Indexed as

HIV InfectionsLymphoma, Large B-Cell, DiffuseReceptors, Antigen, T-CellAdultAnti-Retroviral AgentsFemaleHumansMaleMiddle AgedT-LymphocytesAnti-Retroviral AgentsReceptors, Antigen, T-CellAIDS/HIVHematologyLymphomasT cell receptor

Identifiers

PMID38781015
PMCPMC11383373

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.