Evidence map›Paper›PMID 38779718›Full record

ArticleEmerging microbes & infections2024

SARS-CoV-2 omicron BA.2.87.1 exhibits higher susceptibility to serum neutralization than EG.5.1 and JN.1.

Qian Wang, Yicheng Guo, Logan T Schwanz, Ian A Mellis, Yiwei Sun, Yiming Qu, Guillaume Urtecho, Riccardo Valdez, Emily Stoneman, Aubree Gordon and 3 more

Abstract read
In one paragraph

Article in Emerging microbes & infections, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Qian WangAaron Diamond AIDS Research Center, Columbia University Vagelos College of Physicians and Surgeons, New York, NY, USA.
Yicheng GuoAaron Diamond AIDS Research Center, Columbia University Vagelos College of Physicians and Surgeons, New York, NY, USA.
Logan T SchwanzDepartment of Pathobiology and Mechanisms of Disease, Columbia University Vagelos College of Physicians and Surgeons, New York, NY, USA.
Ian A MellisAaron Diamond AIDS Research Center, Columbia University Vagelos College of Physicians and Surgeons, New York, NY, USA.
Yiwei SunDepartment of Biomedical Informatics, Columbia University Vagelos College of Physicians and Surgeons, New York, NY, USA.
Yiming QuDepartment of Systems Biology, Columbia University Vagelos College of Physicians and Surgeons, New York, NY, USA.
Guillaume UrtechoDepartment of Systems Biology, Columbia University Vagelos College of Physicians and Surgeons, New York, NY, USA.
Riccardo ValdezDepartment of Pathology, University of Michigan, Ann Arbor, MI, USA.
Emily StonemanDivision of Infectious Diseases, Department of Internal Medicine, University of Michigan, Ann Arbor, MI, USA.
Aubree GordonDepartment of Epidemiology, University of Michigan, Ann Arbor, MI, USA.
Harris H WangDepartment of Systems Biology, Columbia University Vagelos College of Physicians and Surgeons, New York, NY, USA.
David D HoAaron Diamond AIDS Research Center, Columbia University Vagelos College of Physicians and Surgeons, New York, NY, USA.
Lihong LiuAaron Diamond AIDS Research Center, Columbia University Vagelos College of Physicians and Surgeons, New York, NY, USA.

Funding

COLLABORATIVE INFLUENZA VACCINE INNOVATION CENTER: UNIVERSAL INFLUENZA VACCINE RESEARCH75N93019C00051 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KRAMMER, FLORIAN · 2019 to 2025
$105.4M
NIAID Centers of Excellence for Influenza Research and Response: Universal Influenza Vaccine Research Activities75N93021C00014 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI GARCIA-SASTRE, ADOLFO · 2021 to 2025
$62.6M
Rapid and efficient generation of sequence variants by templated synthesisR21HG013161 · NHGRI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI WANG, HARRIS H · 2023 to 2023
$452k
NHGRI NIH HHS R21 HG013161NIAID NIH HHS 75N93019C00051NIAID NIH HHS 75N93021C00014
6 · The paper itself

Abstract

As SARS-CoV-2 continues to spread and mutate, tracking the viral evolutionary trajectory and understanding the functional consequences of its mutations remain crucial. Here, we characterized the antibody evasion, ACE2 receptor engagement, and viral infectivity of the highly mutated SARS-CoV-2 Omicron subvariant BA.2.87.1. Compared with other Omicron subvariants, including EG.5.1 and the current predominant JN.1, BA.2.87.1 exhibits less immune evasion, reduced viral receptor engagement, and comparable infectivity in Calu-3 lung cells. Intriguingly, two large deletions (Δ15-26 and Δ136-146) in the N-terminal domain (NTD) of the spike protein facilitate subtly increased antibody evasion but significantly diminish viral infectivity. Collectively, our data support the announcement by the USA CDC that the public health risk posed by BA.2.87.1 appears to be low.

Indexed as

Antibodies, NeutralizingAntibodies, ViralCOVID-19Immune EvasionSARS-CoV-2Spike Glycoprotein, CoronavirusAngiotensin-Converting Enzyme 2Cell LineHumansMutationNeutralization TestsACE2 protein, humanAngiotensin-Converting Enzyme 2Antibodies, NeutralizingAntibodies, ViralSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2antibody evasionBA.2.87.1COVID-19EG.5.1JN.1polyclonal sera; mRNA vaccinesreceptor engagementSARS-CoV-2viral infectivity

Identifiers

PMID38779718
PMCPMC11146261

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.