Evidence map›Paper›PMID 38778869›Full record

ArticleDigital health

Toward interpretable and generalized mitosis detection in digital pathology using deep learning.

Hasan Farooq, Saira Saleem, Iffat Aleem, Ayesha Iftikhar, Umer Nisar Sheikh, Hammad Naveed

Abstract read
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Article in Digital health. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

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5 · Who and what money

Authors and funding

6 authors.

Hasan FarooqComputational Biology Research Lab, National University of Computer & Emerging Sciences, Islamabad, Pakistan.ORCID https://orcid.org/0009-0005-3782-8105
Saira SaleemShaukat Khanum Memorial Cancer Hospital and Research Centre, Lahore, Pakistan.ORCID https://orcid.org/0000-0001-8170-2984
Iffat AleemShaukat Khanum Memorial Cancer Hospital and Research Centre, Lahore, Pakistan.
Ayesha IftikharShaukat Khanum Memorial Cancer Hospital and Research Centre, Lahore, Pakistan.
Umer Nisar SheikhShaukat Khanum Memorial Cancer Hospital and Research Centre, Lahore, Pakistan.
Hammad NaveedComputational Biology Research Lab, National University of Computer & Emerging Sciences, Islamabad, Pakistan.ORCID https://orcid.org/0000-0002-1867-974X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Objective: The mitotic activity index is an important prognostic factor in the diagnosis of cancer. The task of mitosis detection is difficult as the nuclei are microscopic in size and partially labeled, and there are many more non-mitotic nuclei compared to mitotic ones. In this paper, we highlight the challenges of current mitosis detection pipelines and propose a method to tackle these challenges. Methods: Our proposed methodology is inspired from recent research on deep learning and an extensive analysis on the dataset and training pipeline. We first used the MiDoG'22 dataset for training, validation, and testing. We then tested the methodology without fine-tuning on the TUPAC'16 dataset and on a real-time case from Shaukat Khanum Memorial Cancer Hospital and Research Centre. Results: Our methodology has shown promising results both quantitatively and qualitatively. Quantitatively, our methodology achieved an F1-score of 0.87 on the MiDoG'22 dataset and an F1-score of 0.83 on the TUPAC dataset. Qualitatively, our methodology is generalizable and interpretable across various datasets and clinical settings. Conclusion: In this paper, we highlight the challenges of current mitosis detection pipelines and propose a method that can accurately predict mitotic nuclei. We illustrate the accuracy, generalizability, and interpretability of our approach across various datasets and clinical settings. Our methodology can speed up the adoption of computer-aided digital pathology in clinical settings.

Indexed as

deep learningdigital pathologygeneralizabilityinterpretable AIMitosis detection

Identifiers

PMID38778869
PMCPMC11110526

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.