Evidence map›Paper›PMID 38778582›Full record

ArticleEnvironmental microbiology reports2024

Bacteria on the foundational kelp in kelp forest ecosystems: Insights from culturing, whole genome sequencing and metabolic assays.

Isaac T Younker, Nichos Molnar, Kaylie Scorza, Roo Weed, Samuel H Light, Catherine A Pfister

Abstract read
In one paragraph

Article in Environmental microbiology reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Isaac T YounkerCommittee on Microbiology, The University of Chicago, Chicago, Illinois, USA.ORCID 0000-0002-2556-1707
Nichos MolnarThe College, The University of Chicago, Chicago, Illinois, USA.ORCID 0009-0003-1192-2668
Kaylie ScorzaThe College, The University of Chicago, Chicago, Illinois, USA.ORCID 0009-0001-9601-8680
Roo WeedThe Graduate Program in Biophysical Sciences, The University of Chicago, Chicago, Illinois, USA.ORCID 0000-0002-9996-3784
Samuel H LightDepartment of Microbiology, The University of Chicago, Chicago, Illinois, USA.ORCID 0000-0002-8074-1348
Catherine A PfisterDepartment of Ecology and Evolution, The University of Chicago, Chicago, Illinois, USA.ORCID 0000-0003-0892-637X

Funding

Fellowship from the University of Chicago Biological Sciences Collegiate DivisionSearle Scholars ProgramUniversity of Chicago
6 · The paper itself

Abstract

In coastal marine ecosystems, kelp forests serve as a vital habitat for numerous species and significantly influence local nutrient cycles. Bull kelp, or Nereocystis luetkeana, is a foundational species in the iconic kelp forests of the northeast Pacific Ocean and harbours a complex microbial community with potential implications for kelp health. Here, we report the isolation and functional characterisation of 16 Nereocystis-associated bacterial species, comprising 13 Gammaproteobacteria, 2 Flavobacteriia and 1 Actinomycetia. Genome analyses of these isolates highlight metabolisms potentially beneficial to the host, such as B vitamin synthesis and nitrogen retention. Assays revealed that kelp-associated bacteria thrive on amino acids found in high concentrations in the ocean and in the kelp (glutamine and asparagine), generating ammonium that may facilitate host nitrogen acquisition. Multiple isolates have genes indicative of interactions with key elemental cycles in the ocean, including carbon, nitrogen and sulphur. We thus report a collection of kelp-associated microbial isolates that provide functional insight for the future study of kelp-microbe interactions.

Indexed as

EcosystemKelpWhole Genome SequencingBacteriaCarbonGammaproteobacteriaGenome, BacterialNitrogenPacific OceanPhylogenySeawaterCarbonNitrogen

Identifiers

PMID38778582
PMCPMC11112141

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.