Evidence map›Paper›PMID 38778016›Full record

ArticleScientific data2024

From Planning Stage Towards FAIR Data: A Practical Metadatasheet For Biomedical Scientists.

Lea Seep, Stephan Grein, Iva Splichalova, Danli Ran, Mickel Mikhael, Staffan Hildebrand, Mario Lauterbach, Karsten Hiller, Dalila Juliana Silva Ribeiro, Katharina Sieckmann and 28 more

Abstract read
In one paragraph

Article in Scientific data, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Toward Sex-Specific Biomaterials Innovation: A Perspective.ACS biomaterials science & engineering · 2025
    Review
  7. Article
  8. Review
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

38 authors.

Lea SeepComputational Biology, Life & Medical Sciences (LIMES) Institute, University of Bonn, Bonn, Germany.ORCID http://orcid.org/0000-0002-0399-1896
Stephan GreinComputational Biology, Life & Medical Sciences (LIMES) Institute, University of Bonn, Bonn, Germany.
Iva SplichalovaDevelopmental Biology of the Immune System, Life & Medical Sciences (LIMES) Institute, University of Bonn, Bonn, Germany.
Danli RanInstitute of Pharmacology and Toxicology, University Hospital, University of Bonn, Bonn, Germany.
Mickel MikhaelInstitute of Pharmacology and Toxicology, University Hospital, University of Bonn, Bonn, Germany.
Staffan HildebrandInstitute of Pharmacology and Toxicology, University Hospital, University of Bonn, Bonn, Germany.
Mario LauterbachDepartment of Bioinformatics and Biochemistry, Technical University Braunschweig, Braunschweig, Germany.
Karsten HillerDepartment of Bioinformatics and Biochemistry, Technical University Braunschweig, Braunschweig, Germany.ORCID http://orcid.org/0000-0001-9322-5820
Dalila Juliana Silva RibeiroInstitute of Innate Immunity, University Hospital Bonn, University of Bonn, Bonn, Germany.
Katharina SieckmannInstitute of Innate Immunity, University Hospital Bonn, University of Bonn, Bonn, Germany.ORCID http://orcid.org/0009-0008-0336-8835
Ronja KardinalInstitute of Innate Immunity, University Hospital Bonn, University of Bonn, Bonn, Germany.
Hao HuangDevelopmental Biology of the Immune System, Life & Medical Sciences (LIMES) Institute, University of Bonn, Bonn, Germany.ORCID http://orcid.org/0000-0003-3878-3947
Jiangyan YuComputational Biology, Life & Medical Sciences (LIMES) Institute, University of Bonn, Bonn, Germany.
Sebastian KallabisSystems Immunology and Proteomics, Institute of Innate Immunity, Medical Faculty, University of Bonn, Bonn, Germany.
Janina BehrensDepartment of Biochemistry and Molecular Cell Biology, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.
Andreas TillDepartment of Internal Medicine I, Division of Endocrinology, Diabetes and Metabolism, University Medical Center Bonn, Bonn, Germany.
Viktoriya PeevaDepartment of Internal Medicine I, Division of Endocrinology, Diabetes and Metabolism, University Medical Center Bonn, Bonn, Germany.
Akim StrohmeyerChair of Molecular Nutritional Medicine, TUM School of Life Sciences, Technical University of Munich, Freising, Germany.
Johanna BruderChair of Molecular Nutritional Medicine, TUM School of Life Sciences, Technical University of Munich, Freising, Germany.
Tobias BlumImmunology and Environment, Life & Medical Sciences (LIMES) Institute, University of Bonn, Bonn, Germany.
Ana Soriano-ArroquiaInstitute of Pharmacology and Toxicology, University Hospital, University of Bonn, Bonn, Germany.
Dominik TischerInstitute of Pharmacology and Toxicology, University Hospital, University of Bonn, Bonn, Germany.
Katharina KuellmerChair of Molecular Nutritional Medicine, TUM School of Life Sciences, Technical University of Munich, Freising, Germany.
Yuanfang LiImmunogenomics & Neurodegeneration, German Center for Neurodegenerative Diseases (DZNE), Bonn, Germany.
Marc BeyerImmunogenomics & Neurodegeneration, German Center for Neurodegenerative Diseases (DZNE), Bonn, Germany.ORCID http://orcid.org/0000-0001-9704-148X
Anne-Kathrin GellnerDepartment of Psychiatry and Psychotherapy, University Hospital Bonn, Bonn, Germany.
Tobias FrommeChair of Molecular Nutritional Medicine, TUM School of Life Sciences, Technical University of Munich, Freising, Germany.
Henning WackerhageSchool for Medicine and Health, Faculty of Sport and Health Sciences, Technical University of Munich, Munich, Germany.
Martin KlingensporChair of Molecular Nutritional Medicine, TUM School of Life Sciences, Technical University of Munich, Freising, Germany.
Wiebke K FenskeDepartment of Internal Medicine I, Division of Endocrinology, Diabetes and Metabolism, University Medical Center Bonn, Bonn, Germany.
Ludger SchejaDepartment of Biochemistry and Molecular Cell Biology, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.
Felix MeissnerSystems Immunology and Proteomics, Institute of Innate Immunity, Medical Faculty, University of Bonn, Bonn, Germany.
Andreas SchlitzerQuantitative Systems Biology, Life & Medical Sciences (LIMES) Institute, University of Bonn, Bonn, Germany.
Elvira MassDevelopmental Biology of the Immune System, Life & Medical Sciences (LIMES) Institute, University of Bonn, Bonn, Germany.ORCID http://orcid.org/0000-0003-2318-2356
Dagmar WachtenInstitute of Innate Immunity, University Hospital Bonn, University of Bonn, Bonn, Germany.ORCID http://orcid.org/0000-0003-4800-6332
Eicke LatzInstitute of Innate Immunity, University Hospital Bonn, University of Bonn, Bonn, Germany.
Alexander PfeiferInstitute of Pharmacology and Toxicology, University Hospital, University of Bonn, Bonn, Germany.
Jan HasenauerComputational Biology, Life & Medical Sciences (LIMES) Institute, University of Bonn, Bonn, Germany. jan.hasenauer@uni-bonn.de.

Funding

Deutsche Forschungsgemeinschaft (German Research Foundation) 390685813Deutsche Forschungsgemeinschaft (German Research Foundation) 432325352Deutsche Forschungsgemeinschaft (German Research Foundation) 450149205Deutsche Forschungsgemeinschaft (German Research Foundation) 458597554Deutsche Forschungsgemeinschaft (German Research Foundation) E 1159/2-1Deutsche Forschungsgemeinschaft (German Research Foundation) FE 1159/5-1Deutsche Forschungsgemeinschaft (German Research Foundation) FE 1159/6-1European Research Council
6 · The paper itself

Abstract

Datasets consist of measurement data and metadata. Metadata provides context, essential for understanding and (re-)using data. Various metadata standards exist for different methods, systems and contexts. However, relevant information resides at differing stages across the data-lifecycle. Often, this information is defined and standardized only at publication stage, which can lead to data loss and workload increase. In this study, we developed Metadatasheet, a metadata standard based on interviews with members of two biomedical consortia and systematic screening of data repositories. It aligns with the data-lifecycle allowing synchronous metadata recording within Microsoft Excel, a widespread data recording software. Additionally, we provide an implementation, the Metadata Workbook, that offers user-friendly features like automation, dynamic adaption, metadata integrity checks, and export options for various metadata standards. By design and due to its extensive documentation, the proposed metadata standard simplifies recording and structuring of metadata for biomedical scientists, promoting practicality and convenience in data management. This framework can accelerate scientific progress by enhancing collaboration and knowledge transfer throughout the intermediate steps of data creation.

Indexed as

Data ManagementMetadataBiomedical ResearchSoftware

Identifiers

PMID38778016
PMCPMC11111677

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.