Evidence map›Paper›PMID 38776551›Full record

ArticleThe oncologist2024

A comprehensive analysis of POLE/POLD1 genomic alterations in colorectal cancer.

Osama Mosalem, Tucker W Coston, Robin Imperial, Elizabeth Mauer, Christopher Thompson, Binyam Yilma, Tanios S Bekaii-Saab, Melissa Conrad Stoppler, Jason S Starr

Abstract read
In one paragraph

Article in The oncologist, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  4. Review
  5. Article
  6. Article
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  8. Article
  9. Article
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  11. Colorectal Cancers and Immunotherapy.Cancer treatment and research · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Osama MosalemDepartment of Medicine, Division of Hematology and Oncology, Mayo Clinic, Jacksonville, FL, USA.ORCID 0000-0002-3779-185X
Tucker W CostonDepartment of Medicine, Division of Medical Oncology, Duke Cancer Center, Raleigh, NC, USA.ORCID 0000-0002-5843-2506
Robin ImperialDepartment of Medicine, Division of Hematology and Oncology, Mayo Clinic, Jacksonville, FL, USA.ORCID 0000-0001-5413-087X
Elizabeth MauerTempus AI, Chicago, IL, USA.ORCID 0000-0002-9012-0502
Christopher ThompsonTempus AI, Chicago, IL, USA.
Binyam YilmaTempus AI, Chicago, IL, USA.
Tanios S Bekaii-SaabDepartment of Medicine, Division of Hematology and Oncology, Mayo Clinic, Phoenix, AZ, USA.ORCID 0000-0003-4653-4537
Melissa Conrad StopplerTempus AI, Chicago, IL, USA.
Jason S StarrDepartment of Medicine, Division of Hematology and Oncology, Mayo Clinic, Jacksonville, FL, USA.ORCID 0000-0002-8674-8102

Funding

Tempus AI
6 · The paper itself

Abstract

introductionPathogenic mutations in POLE/POLD1 lead to decreased fidelity of DNA replication, resulting in a high tumor mutational burden (TMB-H), defined as TMB ≥ 10 mut/Mb, independent of deficient mismatch repair (dMMR) and microsatellite instability high (MSI-H) status.

methodsDe-identified records of patients with colorectal cancer (CRC) profiled with the Tempus xT assay (DNA-seq of 595-648 genes at 500×) were identified from the Tempus Database.

resultsAmong 9136 CRC samples profiled, the frequency of POLE/POLD1 genomic alterations was 2.4% (n = 217). Copy number loss was the most common genomic alteration (64%, n = 138) of POLE/POLD1, followed by copy number amplifications (18%, n = 40) and short variant mutations (18%, n = 39). The POLE/POLD1 mutated group presented with a higher frequency of TMB-H phenotype relative to wild type (WT; 22% vs. 9%, P < .001), with a median TMB of 127 mut/Mb in the TMB-H POLE/POLD1 subset. The TMB showed a dramatic contrast between POLE/POLD1 short variant mutations as compared to the group with copy number alterations, with a TMB of 159 mut/Mb vs 15 mut/Mb, respectively. Thus, the short variant mutations represented the so-called ultra-hypermutated phenotype. The POLE/POLD1 mutated group, as compared to WT, exhibited a higher rate of coexisting mutations, including APC, ALK, ATM, BRCA2, and RET mutations.

conclusionPatients with POLE/POLD1 mutations exhibited significant differences across immunological markers (ie, TMB, MMR, and MSI-H) and molecular co-alterations. Those with short variant mutations represented 18% of the POLE/POLD1 cohort and 0.4% of the total cohort examined. This group of patients had a median TMB of 159 mut/Mb (range 34-488), representing the ultra-hypermutated phenotype. This group of patients is important to identify given the potential for exceptional response to immune checkpoint inhibitors.

Indexed as

Colorectal NeoplasmsDNA Polymerase IIDNA Polymerase IIIMutationPoly-ADP-Ribose Binding ProteinsAdultAgedAged, 80 and overBiomarkers, TumorDNA Copy Number VariationsFemaleGenomicsHumansMaleMicrosatellite InstabilityMiddle AgedBiomarkers, TumorDNA Polymerase IIDNA Polymerase IIIPOLD1 protein, humanPOLE protein, humanPoly-ADP-Ribose Binding Proteinscolorectal cancerDNA repairgeneticsgenomicstumor biomarkers

Identifiers

PMID38776551
PMCPMC11379631

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.