Evidence map›Paper›PMID 38775862›Full record

ArticlePlant cell reports2024

Gene identification, expression analysis, and molecular docking of SAT and OASTL in the metabolic pathway of selenium in Cardamine hupingshanensis.

Yushan Chen, Yao Li, Guoqiang Luo, Cihang Luo, Zhijing Xiao, Yanke Lu, Zhixin Xiang, Zhi Hou, Qiang Xiao, Yifeng Zhou and 1 more

Abstract read
In one paragraph

Article in Plant cell reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Comprehensive Analysis of the OASTL Gene Family in Potato (International journal of molecular sciences · 2024
    Article
  10. The Serine Acetyltransferase (International journal of molecular sciences · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Yushan ChenHubei Key Laboratory of Biological Resources Protection and Utilization, Hubei Minzu University, Enshi, 44500, China.
Yao LiCollege of Biological and Food Engineering, Hubei Minzu University, Enshi, 44500, China.
Guoqiang LuoCollege of Biological and Food Engineering, Hubei Minzu University, Enshi, 44500, China.
Cihang LuoCollege of Biological and Food Engineering, Hubei Minzu University, Enshi, 44500, China.
Zhijing XiaoCollege of Biological and Food Engineering, Hubei Minzu University, Enshi, 44500, China.
Yanke LuHubei Key Laboratory of Selenium Resource Research and Biological Application, Hubei Minzu University, Enshi, 44500, China.
Zhixin XiangHubei Key Laboratory of Selenium Resource Research and Biological Application, Hubei Minzu University, Enshi, 44500, China.
Zhi HouHubei Key Laboratory of Selenium Resource Research and Biological Application, Hubei Minzu University, Enshi, 44500, China.
Qiang XiaoHubei Key Laboratory of Biological Resources Protection and Utilization, Hubei Minzu University, Enshi, 44500, China.
Yifeng ZhouHubei Key Laboratory of Biological Resources Protection and Utilization, Hubei Minzu University, Enshi, 44500, China. 77416757@qq.com.ORCID http://orcid.org/0009-0008-3550-2349
Qiaoyu TangHubei Key Laboratory of Biological Resources Protection and Utilization, Hubei Minzu University, Enshi, 44500, China. 330375856@qq.com.

Funding

Excellent Young and Middle-aged Scientific and Technological Innovation Team Projects of Colleges and Universities in Hubei Province T2020020National Natural Science Foundation of China 32260070Open Fund of Hubei Key Laboratory of Biological Resources Protection and Utilization KYPT012301
6 · The paper itself

Abstract

key messageIdentification of selenium stress-responsive expression and molecular docking of serine acetyltransferase (SAT) and O-acetyl serine (thiol) lyase (OASTL) in Cardamine hupingshanensis. A complex coupled with serine acetyltransferase (SAT) and O-acetyl serine (thiol) lyase (OASTL) is the key enzyme that catalyzes selenocysteine (Sec) synthesis in plants. The functions of SAT and OASTL genes were identified in some plants, but it is still unclear whether SAT and OASTL are involved in the selenium metabolic pathway in Cardamine hupingshanensis. In this study, genome-wide identification and comparative analysis of ChSATs and ChOASTLs were performed. The eight ChSAT genes were divided into three branches, and the thirteen ChOASTL genes were divided into four branches by phylogenetic analysis and sequence alignment, indicating the evolutionary conservation of the gene structure and its association with other plant species. qRT-PCR analysis showed that the ChSAT and ChOASTL genes were differentially expressed in different tissues under various selenium levels, suggesting their important roles in Sec synthesis. The ChSAT1;2 and ChOASTLA1;2 were silenced by the VIGS system to investigate their involvement in selenium metabolites in C. hupingshanensis. The findings contribute to understanding the gene functions of ChSATs and ChOASTLs in the selenium stress and provide a reference for further exploration of the selenium metabolic pathway in plants.

Indexed as

CardamineGene Expression Regulation, PlantMolecular Docking SimulationPhylogenyPlant ProteinsSeleniumAcetyltransferasesLyasesMetabolic Networks and PathwaysAcetyltransferasesLyasesPlant ProteinsSeleniumCardamine hupingshanensisO-Acetylserine (thiol) lyaseSelenium metabolismSerine acetyltransferaseVIGS

Identifiers

PMID38775862
PMCPMC11111505

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.